Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0544.Seq
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 263 NIINWLIPLFIVNSIQPWRLFASTWPSHAHIH 168
           NI++ L+   +   ++ W     T P H  IH
Sbjct: 513 NILDMLVLPKLTLEVEEWNPLTDTVPIHTWIH 544


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
 Frame = +2

Query: 116 YLTSVCGMCGD--HTRASC 166
           Y   +CG CGD  HT   C
Sbjct: 73  YTCPICGACGDIAHTVKYC 91


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 466 FXYDRMXXSSFCCXSXTR 519
           F Y RM   SF C + TR
Sbjct: 109 FSYPRMRAPSFICENETR 126


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 342 LSVNTGMPQKKTLKKVTPFPKII 274
           +S+   +P+ + +  +TPFP+ I
Sbjct: 136 ISIQEQIPRFRHIGPLTPFPRFI 158


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 342 LSVNTGMPQKKTLKKVTPFPKII 274
           +S+   +P+ + +  +TPFP+ I
Sbjct: 377 ISIQEQIPRFRHIGPLTPFPRFI 399


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -3

Query: 146 HRTCHRPRLSTLSRGNFTIWSKPCGVMP 63
           H+   + R   L++    IW+  C + P
Sbjct: 4   HQLKKKRRKKNLNQNQMMIWALDCSIKP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,441
Number of Sequences: 438
Number of extensions: 3187
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)