Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0544.Seq
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 38 0.009
At5g27920.1 68418.m03354 F-box family protein contains similarit... 33 0.15
At3g58530.1 68416.m06524 F-box family protein-related contains w... 33 0.26
At1g15740.1 68414.m01888 leucine-rich repeat family protein 32 0.46
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si... 31 0.81
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident... 30 1.9
At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containi... 29 2.5
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont... 29 2.5
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti... 29 3.3
At2g23810.1 68415.m02843 senescence-associated family protein si... 29 3.3
At5g45210.1 68418.m05549 disease resistance protein (TIR-NBS-LRR... 28 5.7
At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 27 9.9
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
G++ALG G NL + + C G+T QG D + K L V+NL
Sbjct: 437 GIKALGNGCPNLLKVKVKKCRGVTTQGADLLRKRRALLVVNL 478
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGL 132
GL++LG ++ +DL C G+ +GL++I K L L LGL
Sbjct: 394 GLQSLGCYSMLVQELDLTDCYGVNDRGLEYISKCSNLQRLKLGL 437
>At3g58530.1 68416.m06524 F-box family protein-related contains weak
similarity to F-box protein FBL2 (GI:6010699) [Rattus
norvegicus]
Length = 353
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 25 LRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHVR 144
L +L+ +D+ G I+ +G+ HI K +L LNL W VR
Sbjct: 239 LADLRFLDICGAQNISDEGIGHIAKCNKLESLNL-TWCVR 277
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
G+RAL L NLK +DL C GI GL H+ L +L LN+
Sbjct: 204 GMRALSN-LVNLKKLDLEKCPGI-DGGLVHLRALTKLESLNI 243
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 19 EGLRNLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
+GL L ++L GC +T LD + L L LNL
Sbjct: 282 KGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNL 317
>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 665
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVK 99
GL +G G NL+ +DLY GIT G+ I +
Sbjct: 448 GLSYIGMGCSNLRELDLYRSVGITDVGISTIAQ 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIV-KLPRLSVLNL 126
GL+A+G +LK + L C +T +GL +V KL L L++
Sbjct: 320 GLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDI 362
>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
identical to F-box protein family, AtFBL4 (GP:21536497)
[Arabidopsis thaliana]; similar to grr1 GI:2407790 from
[Glycine max]
Length = 610
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVKLPRL 111
L LGEG LK + L C IT GL+H+V+ +L
Sbjct: 519 LAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKL 554
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHI 93
G+RA+G+G + LK + L C ++ +GL+ I
Sbjct: 311 GMRAIGKGSKKLKDLTLSDCYFVSCKGLEAI 341
>At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 689
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 38/86 (44%)
Frame = +1
Query: 43 IDLYGCTGITPQGLDHIVKLPRLSVLNLGLWHVR*PHTR*LLCMCACDGHVEANKRQGCI 222
+DL G G + I +P N+G+W LL +C G +E K G I
Sbjct: 457 VDLLGRAGRLKEAKHLIDTMPIKP--NVGIWQT-------LLSLCRVHGDIELGKEVGKI 507
Query: 223 LLTMNKGINQFMILMSNNYFRKRGYF 300
LL ++ N +M +N + + GY+
Sbjct: 508 LLRID-AKNPANYVMMSNLYGQAGYW 532
>At1g69545.1 68414.m07997 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeat domains;
similar to disease resistance protein RPP1-WsA
(GI:3860163)[Arabidopsis thaliana]
Length = 703
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +1
Query: 31 NLKAIDLYGCTGI--TPQGLDHIVKLPRLSVL 120
N+K++D+ GC+ + P + +++ LPRL ++
Sbjct: 44 NIKSLDIQGCSSLLKLPSSIGNLITLPRLDLM 75
>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
ligase SCF complex F-box subunit; identical to F-box
containing protein ORE9 GI:15420162 from [Arabidopsis
thaliana]
Length = 693
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 1 GLRALGEGLRNLKAIDLYGCTGITPQGLDHIVKL 102
GL A+G G L ++ GC +T GL +V L
Sbjct: 364 GLVAIGRGCCKLTTFEIQGCENVTVDGLRTMVSL 397
>At2g23810.1 68415.m02843 senescence-associated family protein
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 195
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 244 FLYSLSIVYNLGACSLQHGRRTHTYTTT 161
FL L IVY++G C+ ++ +R +Y+ T
Sbjct: 163 FLVFLIIVYSVGCCAFRNNKRDDSYSRT 190
>At5g45210.1 68418.m05549 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 697
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 31 NLKAIDLYGCTGITPQGLDHIVKLPRLSVLNL 126
NL+ IDL GCT + + + H +L L LNL
Sbjct: 626 NLEKIDLQGCTSL--KSIPHTDRLKNLQFLNL 655
>At2g25490.1 68415.m03052 F-box family protein (FBL6) contains
similarity to grr1 GI:2407790 from [Glycine max]
Length = 628
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 16 GEGLRNLKAIDLYGCTGITPQGLDHIVK 99
G GL+ L ++ + C G+T GL+ + K
Sbjct: 331 GVGLQKLNSLTITACQGVTDMGLESVGK 358
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 4 LRALGEGLRNLKAIDLYGCTGITPQGLDHIVK 99
L A+G+ L+ IDL G GIT G H+++
Sbjct: 459 LAAIGKLCPQLEDIDLCGLKGITESGFLHLIQ 490
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,003
Number of Sequences: 28952
Number of extensions: 216327
Number of successful extensions: 519
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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