Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0543.Seq
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   119   6e-28
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   3.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   4.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.1  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  119 bits (286), Expect = 6e-28
 Identities = 56/82 (68%), Positives = 66/82 (80%)
 Frame = +3

Query: 3   VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
           VP P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT
Sbjct: 64  VPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLT 121

Query: 183 SVYNAILEDLVFPAEIVGKRIR 248
           +V+NAILED+VFP EI+GKR R
Sbjct: 122 AVHNAILEDIVFPTEIIGKRTR 143



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 257 DGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
           DG + IKV LD     T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 147 DGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 127 LGLGRILRSPTKTTCLPLNFFSSSRTS 47
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 587 RQLGNSEEARTXXPFPTVAQLKWANWQIV 673
           R+  N  EAR   PF   + L W N  I+
Sbjct: 51  RKFKNEREARKQLPFEVFSDLIWTNGSII 79


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 155 KEATLKDIDLCVQCYPRGLGLPC 223
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,750
Number of Sequences: 5004
Number of extensions: 59713
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)