Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0543.Seq
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...    96   4e-20
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...    93   2e-19
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     67   1e-11
08_02_0788 + 21201533-21201808,21201923-21202012,21202501-212025...    31   1.6  
04_01_0574 - 7450124-7450525,7450957-7451322                           30   2.1  
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   3.7  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 50/84 (59%), Positives = 63/84 (75%)
 Frame = +3

Query: 3   VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
           VP    KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT
Sbjct: 65  VPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLT 120

Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
           +V++ ILED+V+PAEIVGKRIR +
Sbjct: 121 AVHDGILEDVVYPAEIVGKRIRYR 144



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 18/44 (40%), Positives = 35/44 (79%)
 Frame = +2

Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
           ++DG+++IK+ LD  ++   E+K++TF +VY++L G++V FE+P
Sbjct: 144 RLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 48/82 (58%), Positives = 61/82 (74%)
 Frame = +3

Query: 3   VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
           VP    KA++KI +RLVRELEKKFSGK VV V  R+I+  P   + V     RPR+RTLT
Sbjct: 78  VPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLT 133

Query: 183 SVYNAILEDLVFPAEIVGKRIR 248
           +V++ ILED+V+PAEIVGKR+R
Sbjct: 134 AVHDGILEDVVYPAEIVGKRVR 155



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 18/43 (41%), Positives = 33/43 (76%)
 Frame = +2

Query: 254 VDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
           +DG +++K+ LD  ++   E+K+DTF SVY++L G++V F++P
Sbjct: 158 LDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 36/72 (50%), Positives = 51/72 (70%)
 Frame = +3

Query: 21  KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAI 200
           KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +P +K    +    PR+RTL +V++ I
Sbjct: 56  KAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGI 111

Query: 201 LEDLVFPAEIVG 236
           LED+V    ++G
Sbjct: 112 LEDVVSQLRLLG 123


>08_02_0788 +
           21201533-21201808,21201923-21202012,21202501-21202588,
           21202811-21202944,21203086-21203135,21203248-21203340,
           21203469-21203560,21203762-21203868,21204194-21204229
          Length = 321

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 715 LTXI*REF*XNINAYNLPIRPFQLRNCWEGXSGAGLF-AITQLAKGGCAARRLSWVTP 545
           +T   R F  +I  Y+L   PF+L N W   +G G F AI  +A  G A   L   TP
Sbjct: 137 ITNTYRPFSNDIFRYDLK-EPFKLENGWLLWAGIGFFAAIISIALAGAAMSFLGGETP 193


>04_01_0574 - 7450124-7450525,7450957-7451322
          Length = 255

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = -2

Query: 664 PIRPFQLRNCWEGXSGAGLFAITQLAK------GGCAARRLSWVTPXFSQSRRCKTTAVN 503
           P+R    R  + G  G GL  +   A+       GC  RRL   TP     RR K   +N
Sbjct: 92  PLRVILPRTAYTG-GGEGLARVVSPARRGTIVVAGCTVRRL---TPSEIDERRRKVLCIN 147

Query: 502 CNTTHYRAN 476
           C+ T+ R +
Sbjct: 148 CDETYSRGH 156


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 157 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 41
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,046,201
Number of Sequences: 37544
Number of extensions: 435121
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)