Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0543.Seq
(869 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 145 2e-34
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 145 2e-34
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 145 2e-34
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 145 2e-34
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 145 2e-34
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 145 2e-34
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 54 9e-07
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 145 bits (352), Expect = 2e-34
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT
Sbjct: 64 VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT 123
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 124 AVHDAILEDLVFPSEIVGKRIRVK 147
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 385
++DGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 145 bits (352), Expect = 2e-34
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT
Sbjct: 62 VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT 121
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 122 AVHDAILEDLVFPSEIVGKRIRVK 145
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 385
++DGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 145 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 189
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 145 bits (352), Expect = 2e-34
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT
Sbjct: 64 VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT 123
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 124 AVHDAILEDLVFPSEIVGKRIRVK 147
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 385
++DGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 145 bits (352), Expect = 2e-34
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT
Sbjct: 64 VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT 123
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 124 AVHDAILEDLVFPSEIVGKRIRVK 147
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 385
++DGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 145 bits (352), Expect = 2e-34
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT
Sbjct: 64 VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT 123
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 124 AVHDAILEDLVFPSEIVGKRIRVK 147
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 385
++DGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 145 bits (352), Expect = 2e-34
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT
Sbjct: 64 VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT 123
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 124 AVHDAILEDLVFPSEIVGKRIRVK 147
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 385
++DGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++V FEFPE
Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 53.6 bits (123), Expect = 9e-07
Identities = 25/29 (86%), Positives = 29/29 (100%)
Frame = +3
Query: 168 SRTLTSVYNAILEDLVFPAEIVGKRIRVK 254
SRTLT+V++AILEDLVFP+EIVGKRIRVK
Sbjct: 10 SRTLTAVHDAILEDLVFPSEIVGKRIRVK 38
Score = 41.1 bits (92), Expect = 0.005
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKV 322
++DGS+LIKVHLDK QQ +EHKV
Sbjct: 38 KLDGSRLIKVHLDKAQQNNVEHKV 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,709,439
Number of Sequences: 237096
Number of extensions: 2555811
Number of successful extensions: 7738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7738
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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