Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0543.Seq
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   107   8e-24

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  107 bits (258), Expect = 8e-24
 Identities = 51/85 (60%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTL 179
           VP+P+LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTL
Sbjct: 63  VPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTL 122

Query: 180 TSVYNAILEDLVFPAEIVGKRIRVK 254
           T+V++A L++LV+PAE+VG+RIRVK
Sbjct: 123 TAVHDAWLDELVYPAEVVGRRIRVK 147



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 388
           ++DG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VTFEFP+P
Sbjct: 147 KLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,116
Number of Sequences: 27780
Number of extensions: 352539
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)