Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0543.Seq
(869 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 96 3e-20
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 96 3e-20
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 94 1e-19
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 93 2e-19
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 93 2e-19
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 5.3
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 5.3
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 95.9 bits (228), Expect = 3e-20
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLT
Sbjct: 65 VPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLT 120
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
SV+ A+LED+ +PAEIVGKR R +
Sbjct: 121 SVHEAMLEDVAYPAEIVGKRTRYR 144
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/44 (43%), Positives = 33/44 (75%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
++DG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 95.9 bits (228), Expect = 3e-20
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLT
Sbjct: 65 VPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLT 120
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
SV+ A+LED+ +PAEIVGKR R +
Sbjct: 121 SVHEAMLEDVAYPAEIVGKRTRYR 144
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/44 (43%), Positives = 33/44 (75%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
++DG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 93.9 bits (223), Expect = 1e-19
Identities = 50/84 (59%), Positives = 60/84 (71%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLT
Sbjct: 65 VPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLT 120
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
SV+ A+LED+ FPAEIVGKR R +
Sbjct: 121 SVHEAMLEDVAFPAEIVGKRTRYR 144
Score = 52.8 bits (121), Expect = 3e-07
Identities = 20/44 (45%), Positives = 34/44 (77%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
++DGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLT
Sbjct: 65 VPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLT 120
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
SV+ AIL+D+V PAEIVGKR R +
Sbjct: 121 SVHEAILDDVVLPAEIVGKRTRYR 144
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/44 (50%), Positives = 35/44 (79%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
++DG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +3
Query: 3 VPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLT 182
VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLT
Sbjct: 65 VPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLT 120
Query: 183 SVYNAILEDLVFPAEIVGKRIRVK 254
SV+ AIL+D+V PAEIVGKR R +
Sbjct: 121 SVHEAILDDVVLPAEIVGKRTRYR 144
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/44 (50%), Positives = 35/44 (79%)
Frame = +2
Query: 251 QVDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 382
++DG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 149 QTKEATLKDIDLCVQCYPRGLG 214
Q +E++LK CV+CYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 149 QTKEATLKDIDLCVQCYPRGLG 214
Q +E++LK CV+CYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,785
Number of Sequences: 28952
Number of extensions: 332064
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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