Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0542.Seq
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.97 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.9  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   6.8  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.8  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    26   6.8  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   9.0  

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = +1

Query: 388 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDGMSAFIDQNQSTEGLASEVVNFDES 567
           N  IY+ +F  ++S++ + + I  L   +RT++SD   +  D+ Q  +  +S ++N D S
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSSVSLYDR-QLFDQSSSVILNPDTS 72


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 430  VTWITVVILELIHAIRTLTSDGMSAFIDQNQSTEGLASEVVN 555
            + W T V      AI  L   G++A + +N S E L  +V+N
Sbjct: 1132 LNWFTAVFGSPSKAIVGLARKGLTALLLENSSNEVLLQKVIN 1173


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 562 ESG*LLQIAWSSTGDASFKCLALSTFDGSFCDYHG 666
           E G   Q++W++T      C A     G FCD +G
Sbjct: 119 EFGKFSQVSWTATA-YMISCTAFQPLFGKFCDIYG 152


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 641 SKVDKARHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 519
           S V+K+  + ++S VLDH + +      ++  S+  P + W
Sbjct: 90  SSVEKSTTIPNSSVVLDHLLNEGENTLEEVKPSEIHPHMSW 130


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 54   NEEFLVSASHKLALITSLPFVHTPHRHKIS 143
            N++ L+ A     L   LP V  PHRH +S
Sbjct: 1001 NKDKLIHAPTPQVLAPVLPKVSLPHRHSVS 1030


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 127 IDIRSLLELRID*LASNYCSRETLLHVSPPGPRWSICYYHQDLTDGGSKRAHAQTL 294
           +D + + ++ I  +A++ C +ET LH       W   Y   +   G S  +H Q +
Sbjct: 145 LDKKGITDVFIAGVATDICVKETALHAR----HWYNTYIISEAVKGSSTESHNQAI 196


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 714 QVPSPESNLIPRYP*QPMVVAETTIES**GQTFERCVAG 598
           Q P P     P+ P QP+VVA+ T E     TF++  +G
Sbjct: 237 QAPYPPVQAYPQAPQQPIVVAQPT-EHKHSSTFKKIGSG 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,054
Number of Sequences: 5004
Number of extensions: 68029
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)