Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0542.Seq
         (953 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    30   3.1  
01_06_1128 - 34724469-34724699,34726103-34726213,34726301-347264...    30   3.1  
07_03_1733 + 29117547-29118203                                         29   4.1  
08_01_0200 + 1632883-1633913,1634620-1634677                           29   7.2  
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    28   9.5  
05_01_0304 - 2392526-2392828                                           28   9.5  

>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +1

Query: 490 DGMSAFIDQNQSTEGLASEVVNFDESG*LLQIAWSSTGDASFKCLALSTFDGSFCDYHGL 669
           +G  + +  N+S E L+ + V F E   +   +    GD  F   +L  F  + CDY G 
Sbjct: 189 EGFVSEMKLNKSEETLSRKFVAFQEPSEIACYSRIEGGDVYFDDRSLRLFKRNICDYVGE 248

Query: 670 SRVTGNQVRFRRRNL 714
           +   G +    +R+L
Sbjct: 249 NLNKGFESFIEKRDL 263


>01_06_1128 -
           34724469-34724699,34726103-34726213,34726301-34726409,
           34726517-34726581,34726661-34726838,34726918-34726997,
           34727838-34727961,34728064-34728172,34728299-34728461
          Length = 389

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 412 FLRSYSVTWITVVILELIHAIRTLTSDGMSAFIDQNQSTE 531
           F+R Y  TW  +   +L+  + TLT    S F D  ++T+
Sbjct: 241 FIRCYDCTWTLIDEYDLVDPVHTLTPPEESGFCDGVKATK 280


>07_03_1733 + 29117547-29118203
          Length = 218

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 176 TTVHAKPFSTSVLQGLAGVFATTTKISPTEAPSGL 280
           T V A P   S+  G AG+  TTT  +P +A SGL
Sbjct: 141 TGVQADP--ASLADGAAGILPTTTTTAPFDASSGL 173


>08_01_0200 + 1632883-1633913,1634620-1634677
          Length = 362

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 217 GPRWSICYYHQDLTDGGSKRAHAQTLLRSPSRTSS 321
           G  W IC+Y +    GG  R H    LR  +R ++
Sbjct: 36  GYDWCICFYPEGQGGGGGDREHVSVKLRLVTRCAT 70


>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 253 LTDGGSKRAHAQTLLRSPSRTSSYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYS 429
           L DGGS  + A+    +PS +S+  +V+K  P  S          N S+  FW+  ++S
Sbjct: 183 LQDGGSSASTAECTSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFS 241


>05_01_0304 - 2392526-2392828
          Length = 100

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 170 RATTVHAKPFSTSVLQGLAGVFATTTKISPTEAPS 274
           RATTV A+P +T+V  G AG   ++    P  AP+
Sbjct: 40  RATTVKARPATTAVAAGFAG---SSNSRQPAPAPA 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,008,733
Number of Sequences: 37544
Number of extensions: 498981
Number of successful extensions: 1145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)