Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0542.Seq
         (953 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           26   1.9  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   5.9  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   5.9  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    24   5.9  

>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 756 FARXLXSLDVXAVSQVPSPESNLIPRY 676
           +A  L SLD+ A+   P PE   IP +
Sbjct: 683 YANQLTSLDIKALRLQPVPEDKQIPEF 709


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +3

Query: 303 SVAHE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
           +V +E  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 216 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 260


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +3

Query: 303 SVAHE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
           +V +E  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 216 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 260


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 HE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
           HE  Y C  +    +     LRR   +  +++++P + +SYL
Sbjct: 228 HEKYYPCCAEPYPDIFFNITLRRKTLFYTVNLIIPCVGISYL 269


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,251
Number of Sequences: 2352
Number of extensions: 18093
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 104603103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)