Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0542.Seq
         (953 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical p...    29   6.5  
U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical...    29   6.5  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   8.6  

>Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 179 TVHAKPFSTSVLQGLAGVFATTTKISPTEAPSGLTPRPFCA 301
           T  A P +T++   +  V  TTT  + TE P+  T  PFCA
Sbjct: 31  TTTAVPTTTTI--PIDPVTTTTTTTTTTEEPTTTTTAPFCA 69


>U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical
           protein F25B5.3a protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 457 ELIHAIRTLTSDGMSAFIDQNQSTEGLASEVVN 555
           E I+   TLT   +SA +DQ+Q +   A+E+VN
Sbjct: 12  ETINCTETLTDTPLSATLDQSQFSMFKAAEIVN 44


>AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 179 TVHAKPFSTSVLQGLAGVFATTTKISPTEAPSGLTPRPFCA 301
           T  A P +T++   +  V  TTT  + TE P+  T  PFCA
Sbjct: 31  TTTAVPTTTTI--PIDPVTTTTTTTTTTEEPTTTTTAPFCA 69


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 451 ILELIHAIRTLTSDGMSAFIDQNQSTEGLASEVVNFD 561
           +L++I A+ T   D  S   D+NQ+   + SEV++++
Sbjct: 97  LLQVIPALSTPVGDDCSWLSDKNQTYHAILSEVISYN 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,478,425
Number of Sequences: 27780
Number of extensions: 384671
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)