Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0542.Seq
(953 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 26 0.58
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 26 0.58
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 2.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 2.3
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 4.1
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 5.4
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 9.4
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 25.8 bits (54), Expect = 0.58
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 578 CRSHGQVPATHLSNVWPYQLSMVVSAT 658
C +G+ P L+++W LSM+ AT
Sbjct: 339 CIGYGRFPPQSLTDMWLTMLSMISGAT 365
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 25.8 bits (54), Expect = 0.58
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 578 CRSHGQVPATHLSNVWPYQLSMVVSAT 658
C +G+ P L+++W LSM+ AT
Sbjct: 307 CIGYGRFPPQSLTDMWLTMLSMISGAT 333
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.8
Identities = 9/45 (20%), Positives = 25/45 (55%)
Frame = +3
Query: 303 SVAHE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
+V +E Y C + + ++ +RR + +++++P + +S+L
Sbjct: 217 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.8
Identities = 9/45 (20%), Positives = 25/45 (55%)
Frame = +3
Query: 303 SVAHE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
+V +E Y C + + ++ +RR + +++++P + +S+L
Sbjct: 217 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 542 PKSLILMNLDNFCRSHGQVPAT 607
P+ L +NL + CR HG PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450
Score = 23.4 bits (48), Expect = 3.1
Identities = 9/45 (20%), Positives = 25/45 (55%)
Frame = +3
Query: 303 SVAHE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
+V +E Y C + + ++ +RR + +++++P + +S+L
Sbjct: 213 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 312 HE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
H+ Y C + + LRR + ++++VP + +SYL
Sbjct: 211 HKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 4.1
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 352 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDGMSAFIDQNQSTE 531
M C P DT +Y+F R Y + T VI + + TLT ++D ++STE
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT----VLWLD-SRSTE 282
Query: 532 GLASEVVN 555
+ + VN
Sbjct: 283 RMIAASVN 290
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 5.4
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +3
Query: 303 SVAHE*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 437
+V +E Y C ++ + LRR + +++++P + +S+L
Sbjct: 209 AVRNEAFYICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFL 253
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 475 RTLTSDGMSAFIDQNQSTEGLASEVVNFDE 564
R L SDG A ++ S + A+ V F+E
Sbjct: 381 RGLVSDGNEAEVEGTLSVQPQANPVKGFEE 410
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,633
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -