Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0541.Seq
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    28   1.6  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   6.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   8.7  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   8.7  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    26   8.7  

>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -1

Query: 364 LTSTNCYFCLGVDGCGLINTLFMNYFHYSIRSFI------YTFIMLLRQQDNNFNSLAI 206
           LTS +C   + VDG G +N      F   +  FI       +   L+RQ D+N   LAI
Sbjct: 387 LTSFDCQVDVAVDGIGAVNKANAGGFDLILMDFILPNLDGLSVTCLIRQYDHNTPILAI 445


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 331 VDGCGLINTLFMNYFHYSIRSFIYTFIMLLRQQDNNFNSLAIIM*LLLDNSNLQ 170
           ++ CG   TL   YF   IRS   + +  L Q   N   LA+   +L+D  NL+
Sbjct: 153 IEECGSCCTLVCRYFMPVIRSLYDSKVSELHQTATNLAVLALGP-ILIDTGNLK 205


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 699 FNKNLTRILPNINAYNXPIAIP 634
           +  NL R  PN+N  N P  +P
Sbjct: 248 YQNNLLRAQPNVNCENFPTTVP 269


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 208 IIM*LLLDNSNLQKILDILCKNVYILHFYYLHC 110
           I++ LLL  S LQ  L++   ++ +LH Y L+C
Sbjct: 107 ILLPLLLTPSLLQGPLNLHYADLLLLHLYLLNC 139


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 192 NSYMIIANELK-LLSCCLSNMINV 260
           N Y +  N LK LL CC++N++++
Sbjct: 658 NPYFLQTNYLKNLLCCCITNLVSL 681


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 88  NLKPVFINSVNNKNVKCTHFCIKYQVFSVNW 180
           ++ P+F+ S+   N+K  H   +  +FSV++
Sbjct: 186 DINPLFLKSLERSNLKRLHIVGRRNIFSVSF 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,661
Number of Sequences: 5004
Number of extensions: 72008
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)