Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0541.Seq
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763...    30   3.0  
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    29   4.0  
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912     29   5.2  
06_03_0378 + 20070955-20071354,20071483-20072132                       29   6.9  

>03_04_0123 +
           17475020-17475243,17475367-17475445,17476295-17476393,
           17476499-17476682,17477139-17477206,17477530-17477787,
           17477996-17478049,17478149-17478355,17478507-17478633,
           17479409-17479575
          Length = 488

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 699 FNKNLTRILPNI-NAYNXPIAIPGAQLLGR 613
           + KN +  +PN+ NA   P+ + G QLLGR
Sbjct: 198 YPKNTSTFVPNVVNAQGNPMQVSGGQLLGR 227


>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 145 NVYILHFYYLHC**KQVSNLCFYFM 71
           NVY ++ Y +HC   Q  N+CF+F+
Sbjct: 90  NVYAIYSYTIHC-STQAENICFWFI 113


>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
          Length = 519

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 527 TLALPNL-IALQHIPLS-PAGVIAKRPAPIALPNSCAPGMAMGXL*ALIFGKIRVKFLLK 700
           ++A+ N   A  H  L+ P GV      P++LP   AP ++      L+    R   L++
Sbjct: 215 SMAVENFTFACAHTALAEPVGVAGFGRGPLSLPAQLAPSLSGRFSYCLVAHSFRADRLIR 274

Query: 701 SSPFL 715
           SSP +
Sbjct: 275 SSPLI 279


>06_03_0378 + 20070955-20071354,20071483-20072132
          Length = 349

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 500 VVLNVVTGKTLALPNLIALQHIPL 571
           ++LN +TG+ +ALP    +QH+ L
Sbjct: 101 ILLNPITGRRIALPPATTMQHVTL 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,925,995
Number of Sequences: 37544
Number of extensions: 485543
Number of successful extensions: 1070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)