Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0541.Seq
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    31   1.5  
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    29   6.2  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 563 IPLSPAGVIAKRPAPIALPNS-CAPGM 640
           IP++PA V+A R  P ALP S C PG+
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEPGV 171


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 198 NYY*TIPIYRKYLIFYAKMCTF----YIFIIYTVNKNRFQIYAFTLCCISQKLRKI 43
           N+   +P +R YL +   +C F      F IY   K RFQ Y  +   +++ +R +
Sbjct: 175 NFSSVLPWFRNYLAYQRMLCVFIPIIIYFFIYIRMKLRFQRYGNSNSVLNKGMRHL 230


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 130 VKCTHFCIKYQVFSVNWNCLI 192
           +KC + C+K +VF  N  CLI
Sbjct: 49  LKCAYICLKIRVFHWNLTCLI 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,881
Number of Sequences: 27780
Number of extensions: 428268
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)