Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0541.Seq
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.9  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   9.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 186 TIPIYRKYLIFYAKMCTFYIFIIYTVNKNRFQ 91
           T+P+  KYL+F   + T  + +   V    F+
Sbjct: 295 TVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFR 326


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 502 RFKRRDWENPGVTQLNRLAAHPPF 573
           RFKR  +E P V ++++  + P F
Sbjct: 608 RFKRGKYEEPTVGEISQDGSSPHF 631


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 757 DXRDXVXCGPVLDQG 801
           + +D + CGPV+ QG
Sbjct: 127 ERQDRLTCGPVMPQG 141


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 789 FGPGSPFKDVXXHGQXGKXVXQGVGXYGDPPPNPSF 896
           F PG P      + +    V  G   YG  PPN +F
Sbjct: 51  FPPGPP-----PNNEDSSGVIVGASGYGFVPPNQAF 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,728
Number of Sequences: 438
Number of extensions: 6232
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)