Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0537.Seq
         (947 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R5S2 Cluster: GLP_81_195608_194946; n=1; Giardia lamb...    35   2.6  
UniRef50_A6GKB2 Cluster: Putative uncharacterized protein; n=1; ...    34   6.1  
UniRef50_UPI00006CFBE1 Cluster: Zinc carboxypeptidase family pro...    33   8.0  

>UniRef50_Q7R5S2 Cluster: GLP_81_195608_194946; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_81_195608_194946 - Giardia lamblia
           ATCC 50803
          Length = 220

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 522 SQWTHSTRWSNSVLSGHQAPPCPPRGQGSQQVEDDRTKEADAAKESRPS--VMRRTTQGG 349
           S+W H T WS   +SGHQ  P P + Q      +   +++D  +++RP+  V+RR     
Sbjct: 143 SEWWHQT-WSLLFISGHQVNPRPNQNQFGICPPNSLDEKSDRPEKTRPAAGVLRRGAARV 201

Query: 348 EGP 340
           + P
Sbjct: 202 DAP 204


>UniRef50_A6GKB2 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 791

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 468 APPCPPRGQGSQQVEDDRTKEADAAKESRPSVMRRTTQG 352
           AP CP + +  +QVED   +E  A K  RP    RTT+G
Sbjct: 125 APQCP-KEEEQEQVEDRAREEVTAHKAERPPTPARTTRG 162


>UniRef50_UPI00006CFBE1 Cluster: Zinc carboxypeptidase family
           protein; n=1; Tetrahymena thermophila SB210|Rep: Zinc
           carboxypeptidase family protein - Tetrahymena
           thermophila SB210
          Length = 1251

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 23/101 (22%), Positives = 43/101 (42%)
 Frame = +1

Query: 31  EKVRKNKTFSSS*QNKLVQYKLPYFNEMYPRCKKITA*FEISVFFF*SCQNSLRRYNVE* 210
           E  ++N    +  QNK  Q K   F +    C  I   +        +CQN+   + +  
Sbjct: 462 ENSKQNNNQQNKRQNKYFQIKSRIFEKRIISCSNIEEYYTDDY----NCQNNKNGFGLLS 517

Query: 211 NRNETLTWMVESLSMIDKHDFTSFNSARYVIRKKFKAMHEL 333
            + +     +E LS  ++ D  S +    V + +FK++HE+
Sbjct: 518 TQKDNYNTEIERLSNFNEDDENSQSQKNQVTQFEFKSIHEI 558


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,412,794
Number of Sequences: 1657284
Number of extensions: 16320024
Number of successful extensions: 38510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38484
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87365783978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)