Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0537.Seq
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    28   1.7  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   2.9  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   5.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.7  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 521 PSGRIPQDGRIRSCLDIKLHHALHEAKDRSRSRTIVQKRLMQ 396
           PS  +P D    S +DI +HH   E   R  +   VQK + +
Sbjct: 32  PSVLLPNDATAGSIIDISVHHNKEEEIARETAFDDVQKEIFE 73


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 510 HSTRWSNSVLSGHQAPPCPPRGQGSQQVEDDRTKEADAAKESRPSVMRRTTQGGE 346
           +ST  ++S  SG +       G GS   +  RT +  +  +S+ +  R+TTQGG+
Sbjct: 116 YSTGGNDSYSSGGRNEDYSTSG-GSYTTDPSRTDDTASYGQSQYNQSRKTTQGGD 169


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 480 SGHQAPPCPPRGQGSQQVEDDRTKEADAAKE 388
           +G +APP PP  + + + E+  T E D  KE
Sbjct: 690 TGGRAPPPPPAEEVAPENEEVETMEIDEQKE 720


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 426 EDDRTKEADAAKESRPSVMRRTTQGGEGPYCQFMHRLKF 310
           ED++ ++A+ A E RP+ + + +Q        F+ RL +
Sbjct: 234 EDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSW 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,554
Number of Sequences: 5004
Number of extensions: 67459
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)