Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0537.Seq
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317...    29   7.1  
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985...    28   9.4  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    28   9.4  

>11_06_0399 -
           23129476-23129745,23131040-23131121,23131216-23131711,
           23132135-23132699,23132825-23132893
          Length = 493

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 561 H*ELFSTRRIVQTSQWTHSTRWSNSVLSGHQAPPCPPRGQGSQQVEDDR 415
           H +L S RR V  S+W  + +W     S H        G+GS+  E+ R
Sbjct: 136 HHQLVSARRSVP-SKWEDAEKWVRQASSDHHGGHHHHHGKGSKLQEEKR 183


>11_03_0093 -
           9852075-9852871,9852911-9853009,9853208-9853646,
           9853803-9854129
          Length = 553

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 690 QKQPAIAHTRFIQPASADLTIMTDRLRCHSLKXETXFDFMFYRH*ELFSTRRIVQTSQWT 511
           ++ P I    F+    A++ + T  +  H    E  F+F          TRRI + S+W+
Sbjct: 491 KETPLILGRSFLSTTGANIDVGTGSILFHINGKEEKFEFQS----STGQTRRIYKWSKWS 546

Query: 510 HSTRW 496
           H  RW
Sbjct: 547 H-PRW 550


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 450 RGQGSQQVEDDRTKEADAAKESRPSVMRRTTQ 355
           RG G   V+DD   E   A  SRPS  RRT +
Sbjct: 173 RGGGGGGVDDDCDWERQGAAVSRPSPRRRTPE 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,421,074
Number of Sequences: 37544
Number of extensions: 467980
Number of successful extensions: 1099
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)