Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0537.Seq
         (947 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   1.9  
AF117749-1|AAD38335.1|  372|Anopheles gambiae serine protease 14...    25   3.3  
AJ439060-2|CAD27753.1|  135|Anopheles gambiae putative cytoskele...    24   5.8  
AJ438610-10|CAD27482.1|  135|Anopheles gambiae putative cytoskel...    24   5.8  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   7.7  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 752 GCPGGDXRHGPTGYEXLXSSKGLRXCQGE 838
           G PG     GP GYE     KG+    GE
Sbjct: 408 GRPGAPGPKGPRGYEGPQGPKGMDGFDGE 436



 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 752 GCPGGDXRHGPTGYEXLXSSKGLRXCQGE 838
           G PG D   G  G   L  +KG R  +GE
Sbjct: 547 GLPGRDGEKGEPGRPGLPGAKGERGLKGE 575


>AF117749-1|AAD38335.1|  372|Anopheles gambiae serine protease 14D2
           protein.
          Length = 372

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 566 IGTRNYLALEGSSKRPSGRIPQDGRIRSCLDIKLHHALHEAKDRSRSRTIVQK 408
           IG  + L L+ + + P G++     +RSCL I+ +  L +       R++V K
Sbjct: 20  IGLSDALNLQDACETPDGKVGTCVYLRSCLSIR-NVLLKKENMTPEDRSLVMK 71


>AJ439060-2|CAD27753.1|  135|Anopheles gambiae putative cytoskeletal
           regulator protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 311 NLRRCMNWQYGPSPPC 358
           NL  C +W + P+ PC
Sbjct: 117 NLTTCPSWAHAPNGPC 132


>AJ438610-10|CAD27482.1|  135|Anopheles gambiae putative
           cytoskeletal regulator protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 311 NLRRCMNWQYGPSPPC 358
           NL  C +W + P+ PC
Sbjct: 117 NLTTCPSWAHAPNGPC 132


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 44   KTKHFHRRDRINLFNINCHTLMKCILGV 127
            K K+FH  + + L  +  HT  K I G+
Sbjct: 2281 KAKYFHGLEELKLAPLTYHTFHKEIKGI 2308


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 900,131
Number of Sequences: 2352
Number of extensions: 17331
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 103776201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)