Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   4.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   7.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   7.3  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 384 YSCTSTTQPRRMIM 343
           +SCTST  PR +IM
Sbjct: 258 WSCTSTNCPRFLIM 271


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 340 LHYHPSWLCSGC----TAIVCYALILSRHNLYYRDNVQ 441
           LH+H SWL S        I     +L R+++Y+  N+Q
Sbjct: 414 LHFHASWLKSKKEFKEELIKFIEEMLQRNDVYFVTNLQ 451


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 340 LHYHPSWLCSGC----TAIVCYALILSRHNLYYRDNVQ 441
           LH+H SWL S        I     +L R+++Y+  N+Q
Sbjct: 421 LHFHASWLKSKKEFKEELIKFIEEMLQRNDVYFVTNLQ 458


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,495
Number of Sequences: 336
Number of extensions: 4066
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)