Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   8.2  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   8.2  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 261  EHLFNTANILRTFVRNSTKSIDHTGNASLSSFV 359
            +H ++ A  +R+   ++   +  TGN++L+SFV
Sbjct: 1172 KHAYDQAKEVRSLTYSTITELVRTGNSTLTSFV 1204


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 25/83 (30%), Positives = 33/83 (39%)
 Frame = -3

Query: 591 QDRYFSFSQLAXCANTTTFSGMVTCSIKCNPCSRAE*MVCSETSPANTYSLNVIPVVKVM 412
           Q RY   S +A   N   F   V  S  CN  S    ++ +  +P+   S +  PV  V 
Sbjct: 129 QQRYMPDSAVAYNPNQDQFGNSVNVSAACNNVSAP--LIANNCAPSFYQSRH--PVADV- 183

Query: 411 PG*NECITNYSCTSTTQPRRMIM 343
           P  N   T  S T  T P  + M
Sbjct: 184 PVTNNTATTTSETDNTIPGNLNM 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,673
Number of Sequences: 5004
Number of extensions: 67022
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)