Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092...    40   0.003

>03_05_0387 +
           23708447-23708470,23708616-23708739,23709081-23709203,
           23710723-23710820,23711778-23711918,23712236-23712361,
           23713316-23713486
          Length = 268

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +3

Query: 3   QMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQL 128
           ++PL I +R   D+GTP VIS P+S     Y Q+A++V  +L
Sbjct: 212 EIPLEIDIRTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRL 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,719,631
Number of Sequences: 37544
Number of extensions: 451134
Number of successful extensions: 887
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)