Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50681| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.40 
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    33   0.40 
SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)                     28   8.7  

>SB_50681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 18  ISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQL 128
           +++R   D G PT ++ PES+   IY++ A  V A++
Sbjct: 1   MAIRMQSDGGKPTTVADPESQIAMIYQETARNVGARI 37


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 220 DVTLMRCISFCRLMNTYLILRIFCGPSSETL--QSRLIIQAMLHYHPSWLCS-GCTAIVC 390
           DV  M C + C+L+N+Y    I  G  +  +   S ++   +LH   S LC   C  + C
Sbjct: 372 DVLCMACFALCKLINSYPGQAILIGDEAGQIPVHSSIMAALVLHLDNSELCQWACQTLAC 431


>SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)
          Length = 584

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 232 MRCISFCRLMNTYLILRIFCGPSSETLQSRLIIQAM 339
           ++    C ++N Y  L    GPS+  L S+++IQ +
Sbjct: 425 LKVFGLCTIINIYPTLLHLLGPSTAKLSSKMLIQLL 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,294,217
Number of Sequences: 59808
Number of extensions: 511628
Number of successful extensions: 941
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)