Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC024919-1|AAH24919.1|  289|Homo sapiens nucleotide binding prot...    39   0.028
AK022722-1|BAB14203.1|  289|Homo sapiens protein ( Homo sapiens ...    39   0.028

>BC024919-1|AAH24919.1|  289|Homo sapiens nucleotide binding
           protein-like protein.
          Length = 289

 Score = 38.7 bits (86), Expect = 0.028
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 6   MPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQL 128
           +PLH+++RE  D G P V S+PES+    Y ++A  V  +L
Sbjct: 244 IPLHLNIREASDTGQPIVFSQPESDEAKAYLRIAVEVVRRL 284


>AK022722-1|BAB14203.1|  289|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12660 fis, clone NT2RM4002174, moderately
           similar to MRP PROTEIN. ).
          Length = 289

 Score = 38.7 bits (86), Expect = 0.028
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 6   MPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQL 128
           +PLH+++RE  D G P V S+PES+    Y ++A  V  +L
Sbjct: 244 IPLHLNIREASDTGQPIVFSQPESDEAKAYLRIAVEVVRRL 284


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,135,415
Number of Sequences: 237096
Number of extensions: 2565258
Number of successful extensions: 3444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3442
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)