Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine rece...    28   7.7  

>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +1

Query: 235 RCISFCRLMNTYLILRIFCGPSSETLQSRLIIQAMLHYHPSWLCSGCTAIVCYALIL 405
           +C SFC  +  ++I        +++ +S +      H+H    C  C  ++CY+ +L
Sbjct: 601 KCCSFCPHIGQFVITAF--DEVTKSTRSYIFSPKTAHFHYQSTCELCPRVICYSTVL 655


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +1

Query: 235 RCISFCRLMNTYLILRIFCGPSSETLQSRLIIQAMLHYHPSWLCSGCTAIVCYALIL 405
           +C SFC  +  ++I        +++ +S +      H+H    C  C  ++CY+ +L
Sbjct: 601 KCCSFCPHIGQFVITAF--DEVTKSTRSYIFSPKTAHFHYQSTCELCPRVICYSTVL 655


>AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.1 protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 190 PFWLFFIHRRDVTLMRCISFCRLMNTYLILRIFCGPSSETLQSRLIIQA--MLHYHPSWL 363
           P  +FFIH  D + +  + F R +      RI C    E     +I+    +L   P +L
Sbjct: 217 PSTMFFIHDTDESHVN-VEFPRRLVERNFRRIACDTCKEASAHWMIVDHDNLLPNSPGYL 275

Query: 364 CSGCTAIVCY 393
           CS C    C+
Sbjct: 276 CSSCYKEFCF 285


>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 3   QMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQL 128
           Q+PL  +L + LD G     + P+S     +  LA++V A+L
Sbjct: 271 QLPLEPALAKALDNGEDFFETNPDSTLAKSFLDLAEKVKAKL 312


>U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein34 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 724 HRRFPVSSITAVSTYQINNAXCXTFRSPLII 632
           HR FP+ + T  S Y I  +    F SP+II
Sbjct: 36  HRSFPIFTATVASLYAIMASFELMFASPMII 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,899
Number of Sequences: 27780
Number of extensions: 390412
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)