Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0536.Seq
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19540.1 68417.m02874 expressed protein                             38   0.012
At1g13680.1 68414.m01608 expressed protein                             29   5.4  
At1g21990.1 68414.m02751 F-box family protein contains F-box dom...    28   7.2  

>At4g19540.1 68417.m02874 expressed protein
          Length = 313

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 3   QMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQL 128
           ++PL +S+RE  D+G P V+S P S  +  Y+ LA  V   L
Sbjct: 248 EIPLEMSIREGSDEGVPVVVSSPGSIVSKAYQDLAQNVVKGL 289


>At1g13680.1 68414.m01608 expressed protein
          Length = 317

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 176 DRAEGNLAWNDF-TLPVE-LSCNAVSQLAVDSGKFALRTADNRWRTFIEI 33
           D+ +  ++ N F T+PV+ L+C   S+  +D  K     A NRW  F+ +
Sbjct: 236 DKTKALVSVNHFKTVPVKILTCEENSEQLLDMIKTCYVAAGNRWANFVAV 285


>At1g21990.1 68414.m02751 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 465

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 66  RPESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV*RLLTILV 200
           R E+EF      +   ++  LY +GE+ PG + F A+ RL  +LV
Sbjct: 124 RVETEFFTSNTLVELTISGALYPEGELPPGGLFFPALKRLSIVLV 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,772
Number of Sequences: 28952
Number of extensions: 353500
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)