Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0534.Seq
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   9.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   9.0  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 113 HSKGKHLHR*IPSKLAHARAFRSFCANTA 27
           HSKG +L   + S+L   R     C NTA
Sbjct: 198 HSKGSYLKENLKSELRKGRLDELMCENTA 226


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -2

Query: 804  PYLGXILWIXKGICDSAYGXKKERI*QKFNANFNKILTLTICPFAHSXCATVGK---GDR 634
            PYL   LW+  GI DS  G     I  +  +  +   TL I   A S  + + +     +
Sbjct: 1257 PYLSRALWLWLGILDSIQGIGNGLILLQTLSRRHVTNTLMISQLAGSATSILARFVSPTK 1316

Query: 633  CGPLRYYP 610
             GP   +P
Sbjct: 1317 TGPANVFP 1324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,847,912
Number of Sequences: 5004
Number of extensions: 80466
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)