Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0534.Seq
         (958 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           32   0.78 
06_01_0894 + 6853797-6853971,6855078-6855295,6856353-6856385,685...    29   5.5  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    29   5.5  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     28   9.6  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 506 ERITIHWPSFYNVV-TGKTLALPNLIALQH 592
           E I+  W  F N+V +G TL++PN + LQH
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_01_0894 +
           6853797-6853971,6855078-6855295,6856353-6856385,
           6856776-6856856,6856857-6857069,6857184-6857381,
           6857456-6857593,6858528-6858644,6858970-6859104
          Length = 435

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 165 STPHR*CFNTLTLIFIATLQGKTFTQMNSFK 73
           S+PH  CF  L + F+ T+ G +  + ++FK
Sbjct: 75  SSPHVVCFGELLIDFVPTVNGVSLAEASAFK 105


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 503 SERITIHWPSFYNVV-TGKTLALPNLIALQH 592
           +E I   W  F N+V +G TL+LP  + LQH
Sbjct: 126 NESIGAAWSRFTNLVQSGPTLSLPEYVLLQH 156


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 506 ERITIHWPSFYNVV-TGKTLALPNLIALQH 592
           E I   W  F N+V +G TL+LP  + LQH
Sbjct: 408 ESIGAAWSRFTNLVQSGLTLSLPEYVLLQH 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,604,261
Number of Sequences: 37544
Number of extensions: 558480
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)