Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0534.Seq
         (958 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    26   1.5  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   1.5  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    24   7.8  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 253 LYIYCIGTYLLFASIEAYISICFT 182
           L +  +G YL+FA I   ISIC T
Sbjct: 301 LVVPLLGKYLIFAMILVSISICVT 324


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 253 LYIYCIGTYLLFASIEAYISICFT 182
           L +  +G YL+FA I   ISIC T
Sbjct: 301 LVVPLLGKYLIFAMILVSISICVT 324


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/proton
            exchanger 3 protein.
          Length = 1221

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 599  LSPAG**RRGPHRSPFPTVA 658
            L P G  R GPH + FP  A
Sbjct: 1069 LDPLGISRAGPHATAFPVTA 1088


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,369
Number of Sequences: 2352
Number of extensions: 21648
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105016554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)