Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0534.Seq
         (958 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.44 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.44 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 253 LYIYCIGTYLLFASIEAYISICFT 182
           L +  +G YL+FA I   ISIC T
Sbjct: 302 LVVPLLGKYLIFAMILVSISICVT 325


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 253 LYIYCIGTYLLFASIEAYISICFT 182
           L +  +G YL+FA I   ISIC T
Sbjct: 302 LVVPLLGKYLIFAMILVSISICVT 325


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 434 LVARSPFHFHQDKGYESIV*NISCVP 357
           L  R  F F QD GY+ I+  +   P
Sbjct: 69  LFGRMFFEFCQDSGYDKILQVLGATP 94


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 434 LVARSPFHFHQDKGYESIV*NISCVP 357
           L  R  F F QD GY+ I+  +   P
Sbjct: 69  LFGRMFFEFCQDSGYDKILQVLGATP 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,033
Number of Sequences: 438
Number of extensions: 6650
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)