Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0534.Seq
         (958 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi...    29   4.6  
At1g27020.1 68414.m03294 expressed protein                             28   8.0  

>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 603

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 402 GQGLRKYSMKYKLCTYIKINMYTF-IFFKC 316
           G+ + KY+ K+  C Y+K+N     +F KC
Sbjct: 249 GKWIHKYAKKHSFCKYVKVNTALIDMFAKC 278


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 550 WENPGVTQLNRLAAHPPFASWVI 618
           WE P  T  N+LA    FA+W +
Sbjct: 163 WEKPTSTDFNQLAKESEFAAWTL 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,361
Number of Sequences: 28952
Number of extensions: 438087
Number of successful extensions: 846
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2304931176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)