Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0530.Seq
         (939 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    27   0.28 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    26   0.49 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.85 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.85 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.9  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 746 THMGLLPALPNSATRGDHPPNLS 678
           TH  L P  PN  T GDH P ++
Sbjct: 689 THADLPPVPPNFPTCGDHVPEIN 711


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 407 LRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPSRRTWTGVVATRKRNLPNTTS 571
           + AAL ++P  R  PLA T R      L G ++PS R    ++  R      TTS
Sbjct: 234 VHAALVTSPRAR--PLARTCRDNRLLVLAGTSSPSNRFTRHLIQRRTHTRHTTTS 286


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 785 KYPLYVHXGYHMETHMGLLPALPNSATRGDHPP 687
           ++P Y H GYH     G +  LPN  T   H P
Sbjct: 384 EHPNYNHYGYHYSGDGGEVAHLPN--THMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 785 KYPLYVHXGYHMETHMGLLPALPNSATRGDHPP 687
           ++P Y H GYH     G +  LPN  T   H P
Sbjct: 332 EHPNYNHYGYHYSGDGGEVAHLPN--THMGHEP 362


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 145 CTMRVRIFLLIKCLMTFKDSITYKYQQTYHPVYFCR 252
           C +  R+F+L   L+  +     + ++ Y+ +YFCR
Sbjct: 302 CLIPFRVFILWIILVPEEQVYHLEIEKYYNILYFCR 337


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   SCRIRYQAYRYRRPANQTI 58
           +C+I  Q + Y  P N TI
Sbjct: 398 ACKIMIQGFSYAFPVNLTI 416


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   SCRIRYQAYRYRRPANQTI 58
           +C+I  Q + Y  P N TI
Sbjct: 398 ACKIMIQGFSYAFPVNLTI 416


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   SCRIRYQAYRYRRPANQTI 58
           +C+I  Q + Y  P N TI
Sbjct: 398 ACKIMIQGFSYAFPVNLTI 416


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   SCRIRYQAYRYRRPANQTI 58
           +C+I  Q + Y  P N TI
Sbjct: 398 ACKIMIQGFSYAFPVNLTI 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,013
Number of Sequences: 336
Number of extensions: 4349
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)