Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0530.Seq
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    28   2.2  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   8.8  

>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -2

Query: 737 GLLPALPNSATRGDHPPNLSILVSGGKKLTRISLVAASE--QEYSPSTESRCFNR*REMW 564
           GL   L   A+  +  PN+  LV  GK   RIS+  ++   + Y P    +     R + 
Sbjct: 136 GLTICLGAKASNTNRAPNMKSLVKQGKNYARISVTISNRGFEAYQPEIYGKSITIERTIR 195

Query: 563 CSGGSAFSSR 534
             G S +  R
Sbjct: 196 REGSSEYRLR 205


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 481 WHPLRENGPVKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVL 606
           WHP   N P+ T     R+ +     +H   RYRL ++  V+
Sbjct: 432 WHPDCLNPPLATLPSNLRKWKCPNHSDHVTPRYRLPEKAKVI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,469
Number of Sequences: 5004
Number of extensions: 70465
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)