Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0530.Seq
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630...    30   2.3  
03_01_0026 + 246682-246866,247791-247915,248452-248625,249377-24...    30   2.3  
09_04_0506 - 18188785-18190599                                         29   4.0  
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    29   5.3  
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841...    29   7.1  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    29   7.1  
11_08_0072 + 28154168-28154680                                         28   9.3  
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721     28   9.3  

>09_06_0056 -
           20561645-20561920,20562024-20562611,20562698-20563055,
           20563149-20563483,20563593-20563633,20563722-20563932,
           20564289-20564348,20564432-20564457,20565066-20565264
          Length = 697

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 418 TLKQPDSKERPSRRDPPSLRAWHPLRENGPVKTNLDRSRRDEKAEPPEHHISRYRLKQRD 597
           T K P       + D P+  A   LRE    K  +D  R+D++A     + +  R K  D
Sbjct: 157 TDKTPKDDTAEHQVDAPAKNARRKLREKRREKRAMDLVRKDDEARVKLENAAIERSKAVD 216

Query: 598 S-VLGLYS 618
           S VLG YS
Sbjct: 217 SAVLGKYS 224


>03_01_0026 +
           246682-246866,247791-247915,248452-248625,249377-249467,
           249516-250554
          Length = 537

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 398 YHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPSRR-TWTGVVA 538
           + PL   LS NP L  +PL        P   Y    P RR  W+G +A
Sbjct: 205 FQPLDDFLSENPFLSPIPLGRLYENIDPAKPYMLEDPIRRAVWSGSLA 252


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 455 AATLRRYGPGTLYGKTAPSRRTWTGVVATRKRNLPNTTSP 574
           AA+ ++YG G  +GK  P  R W+G    R+    +   P
Sbjct: 466 AASDQQYGEGGSHGKERPPEREWSGASDRRREREKDLPPP 505


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 593 GIQCWGYIPVRSPLLXKSWLVSFLRLLICLNSAGDLPSWPNSAE 724
           GIQ  GY+  R     + +  S +++L+C  SAG   SW    E
Sbjct: 372 GIQMEGYMGTRDEETRRFFKHSSVQILLCPRSAGKRHSWVKQQE 415


>09_04_0600 +
           18883094-18883393,18883606-18883755,18883851-18884142,
           18884697-18884858,18884958-18885021,18887573-18888080
          Length = 491

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 360 FCLY**LMVEVALLNILHQPSYSLMPHPSNRNAIRLTAEIYRVVCLLVF 214
           +C+   LM  +ALL +L  PS  L      R A++L    +   C+L++
Sbjct: 423 YCIADRLMARIALLAVLRAPSNDLWKGSRMRLALQLCVRRHTSWCMLLY 471


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 330 VALLNILHQPSYSLMPHPSNRNAIRLTAEI 241
           VA +N +H P Y  +P  SNR   ++ AEI
Sbjct: 247 VATMNKIHIPGYIHLPTKSNRRMKQIAAEI 276


>11_08_0072 + 28154168-28154680
          Length = 170

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 778 HYTYIXGIT-WKRTWXSCXLCRIRPRGEIT 692
           HY +   I  W RT  +C LCR  P G+++
Sbjct: 139 HYFHAACIDEWLRTRATCPLCRAAPAGDVS 168


>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
          Length = 287

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 802 MGPFXKNTHYTYI-XGITWKRTWXSCXLCR 716
           MGPF K+ HY YI   + +   W     CR
Sbjct: 20  MGPFPKSYHYKYILVAVDYVSKWVEAMPCR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,696,159
Number of Sequences: 37544
Number of extensions: 470860
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)