Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0530.Seq
(939 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 40 0.003
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 40 0.003
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 33 0.25
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 33 0.33
SB_45983| Best HMM Match : HLH (HMM E-Value=1.3) 31 1.0
SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 30 2.4
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 30 2.4
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 30 2.4
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 30 2.4
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 30 2.4
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7) 28 9.5
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 367 LAVIFSLRWSLPPA*GCTLKQPDS----KERP 450
L IFS RWSLPP GC KQPDS +ERP
Sbjct: 103 LVPIFSFRWSLPPILGCIPKQPDSSKAHRERP 134
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +1
Query: 367 LAVIFSLRWSLPPA*GCTLKQPDS----KERP 450
L IFS RWSLPP GC KQPDS +ERP
Sbjct: 72 LVPIFSFRWSLPPILGCIPKQPDSSKAHRERP 103
>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 35.1 bits (77), Expect = 0.083
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 367 LAVIFSLRWSLPPA*GCTLKQPDSKERPSRR 459
+ ++ + RWSLPP GC KQPDS + +R
Sbjct: 28 IILLHTRRWSLPPILGCIPKQPDSSKAHRKR 58
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 33.5 bits (73), Expect = 0.25
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = +1
Query: 388 RWSLPPA*GCTLKQPDS----KERP 450
RWSLPP GC KQPDS +ERP
Sbjct: 62 RWSLPPILGCIPKQPDSSKAHRERP 86
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.1 bits (72), Expect = 0.33
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 383 ALDGVYHPLRAALSSNPTLR 442
ALDGVYHP AA +NPT R
Sbjct: 58 ALDGVYHPFWAAFPNNPTRR 77
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 33.1 bits (72), Expect = 0.33
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 383 ALDGVYHPLRAALSSNPTLR 442
ALDGVYHP AA +NPT R
Sbjct: 344 ALDGVYHPFWAAFPNNPTRR 363
>SB_45983| Best HMM Match : HLH (HMM E-Value=1.3)
Length = 68
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 386 LDGVYHPLRAALSSNPTLR 442
LDGVYHP AA +NPT R
Sbjct: 2 LDGVYHPFWAAFPNNPTRR 20
>SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 383 ALDGVYHPLRAALSSNPTLR 442
ALDG YHP AA +NPT R
Sbjct: 58 ALDGFYHPFWAAFPNNPTRR 77
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 62 CLGMQPKMGGKLHLKLNI 79
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 8 CLGMQPKMGGKLHLKLNI 25
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 62 CLGMQPKMGGKLHLKLNI 79
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 758 YHMETHMGLLPALPNSATRGDHPPNLSILVSGGKKLTRISLVAAS-EQEYSP 606
Y M++ G LP+LP++ + PP LS G+ + +SL S ++ +SP
Sbjct: 153 YAMDSVRGRLPSLPHAKGCDEEPPPLSFTDRDGRAYSTMSLDRRSHDRVFSP 204
>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 36 CLGMQPKMGGKLHLKLNI 53
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 61 CLGMQPKMGGKLHLKLNI 78
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 120 CLGMQPKMGGKLHLKLNI 137
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 19 CLGMQPKMGGKLHLKLNI 36
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 428 CLRVQP*AGGKLHLRLNM 375
CL +QP GGKLHL+LN+
Sbjct: 725 CLGMQPKMGGKLHLKLNI 742
>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1951
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 482 GTLYG--KTAPSRRTWTGVVATRKRNLPNT 565
G LYG T SRRT+TGV T+KR L ++
Sbjct: 302 GNLYGFELTTGSRRTFTGVNETQKRQLEDS 331
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 5 CRIRYQAYRYRRP 43
CR YQAYRYRRP
Sbjct: 112 CRHVYQAYRYRRP 124
>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 750 GNAHGXLAXSAEFGHEGRSPAEFKHISKRRKETNQDFXSSGERTG 616
G+ A E G +S + K SKR+K+ D S G++TG
Sbjct: 861 GHQQDPAAHQLEMGWALKSTKKTKRFSKRQKKYLDDMFSIGQQTG 905
>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
Length = 836
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 750 GNAHGXLAXSAEFGHEGRSPAEFKHISKRRKETNQDFXSSGERTG 616
G+ A E G +S + K SKR+K+ D S G++TG
Sbjct: 215 GHQQDPAAHQLEMGWALKSTKKTKRFSKRQKKYLDDMFSIGQQTG 259
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,944,021
Number of Sequences: 59808
Number of extensions: 547285
Number of successful extensions: 1457
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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