Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0530.Seq
         (939 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72517-2|CAA96694.1|  490|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>Z72517-2|CAA96694.1|  490|Caenorhabditis elegans Hypothetical
           protein T28F4.3 protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 424 KQPDSKERPSRRDPPSLRAWHPLRENGPVKTNLDRSRRDEKAEPP 558
           K+ + KE+   ++ P+ +     +ENG +KTN  R  R+  ++PP
Sbjct: 356 KREEEKEKEQEKESPATKE-EKKKENG-LKTNRQRDNREAPSKPP 398


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 227 VCWYLYVME----SLKVIRHLINKKIRTRIVQHNLQ*FYNFASKIYILTS 90
           VC Y+Y+ E    SL   R  I +K  TR++ H +  FYN +  ++ LT+
Sbjct: 121 VCSYVYLFEIRSSSLPQNRFKITRK-STRLLYHAIVFFYNCSCLLFFLTN 169


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 433 DSKERPSRRDPPSLRAWHPLRENGPVKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVL 606
           +S    +RR PP  R      +N P +   +RSRRD    PP    S    +++D  L
Sbjct: 170 ESPSARNRRSPPRTRRDRHDSDNSPPR---NRSRRDSDNSPPRRRPSSPARRRKDDDL 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,168,364
Number of Sequences: 27780
Number of extensions: 395776
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)