Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0530.Seq
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.0  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   7.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   9.2  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 749 ETHMGLLPALPNSATRGDHPPNLSILVSG 663
           + H+G    L  S TRGD P ++S L  G
Sbjct: 621 DLHLGERTTLTCSVTRGDLPLSISWLKDG 649


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 401 HPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPSRRTWTGVV 535
           H    ++  +P  R+     T    G GT+  K++   +TW GV+
Sbjct: 381 HEENESVDKHPNRRARGQLRTKIESGEGTIPVKSSEGIQTWDGVL 425


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 349 LMTYG*SSFIEHITSAKLFFNAPPFKPKRNTAHGRNIQGGM 227
           ++T   S+  E   +     + P F P +NT    NI  GM
Sbjct: 1   MVTMENSNMTEFEENVSFDIDDPDFAPSKNTTITHNILRGM 41


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 508 VKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVLGL 612
           ++T + R+ R     PP+  IS YR  +RD    L
Sbjct: 113 IETIIRRNSR-YPLRPPQEVISHYRRTRRDRYTNL 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,290
Number of Sequences: 438
Number of extensions: 5613
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)