Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0528.Seq
         (964 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   1.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   1.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   1.2  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   2.0  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +1

Query: 685 NRCPRSLGRRLRSNPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSI-FPXRKPSANERC 861
           N C + +G    S   +    N K SP++    LP     H   PS+ +P    S+    
Sbjct: 198 NSCEKKIGLSKISPKESQDAANVKLSPKSA-SSLPPGNNIHGMAPSVMYPHLNRSSPTTA 256

Query: 862 KKIRLXXXTVQN 897
             I     T+QN
Sbjct: 257 TAIASATVTIQN 268


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +1

Query: 685 NRCPRSLGRRLRSNPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSI-FPXRKPSANERC 861
           N C + +G    S   +    N K SP++    LP     H   PS+ +P    S+    
Sbjct: 146 NSCEKKIGLSKISPKESQDAANVKLSPKSA-SSLPPGNNIHGMAPSVMYPHLNRSSPTTA 204

Query: 862 KKIRLXXXTVQN 897
             I     T+QN
Sbjct: 205 TAIASATVTIQN 216


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +1

Query: 685 NRCPRSLGRRLRSNPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSI-FPXRKPSANERC 861
           N C + +G    S   +    N K SP++    LP     H   PS+ +P    S+    
Sbjct: 329 NSCEKKIGLSKISPKESQDAANVKLSPKSA-SSLPPGNNIHGMAPSVMYPHLNRSSPTTA 387

Query: 862 KKIRLXXXTVQN 897
             I     T+QN
Sbjct: 388 TAIASATVTIQN 399


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 53  VCLVALALFGSVAAQPAK 106
           VC++ LA FG V AQ  K
Sbjct: 5   VCVLVLAFFGCVRAQQLK 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,584
Number of Sequences: 336
Number of extensions: 3961
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)