Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0528.Seq
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    30   0.42 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   3.0  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    27   3.0  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.9  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    26   9.1  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 306 STGDFFDGVENYIQSHDVTFKLP---IADTQITVS--PRNLDNDELTLNVKFNKEGARSV 470
           S GDF+D +   + S+  T+ +P   + +  + ++    +L++ + TLN + N+E   S+
Sbjct: 73  SMGDFYDDIRLMV-SNAQTYNMPGSLVYECSVLIANTANSLESKDGTLNEEENEEMESSI 131

Query: 471 GEARKAKLKKIIVP 512
            E  K    +I VP
Sbjct: 132 NEEHKPGTNEIDVP 145


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 643 EDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHGLEQNEHQD 512
           +D +S   +E  ER  + V   + ED D   DEG   ++NE+ +
Sbjct: 233 KDDESSSGSESYERD-EDVDEEEEEDDDENNDEGDDEDENENDE 275


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 679 VRVVGRDLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDS 557
           +R + RDL A+LED +   D +  E+Q  ++ S + + + S
Sbjct: 221 LRNIARDLRAQLEDREKSRDKKDGEKQRDNLASFEDKISTS 261


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 288 NDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDE 425
           N +  R +GDF +         D+   LP+ D  + V P++ D+ E
Sbjct: 218 NSLGTRVSGDFDEDFPTGTVFFDLESHLPLLDVALPVLPKSSDSSE 263


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 706 PRTVGSDLRVRVVGRDLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHGLEQ 527
           P +V   +  ++    L AK E      D  G  ++ K  P+L+ + T+ + D      +
Sbjct: 63  PISVIKSVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAE 122

Query: 526 NE 521
           NE
Sbjct: 123 NE 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,742,762
Number of Sequences: 5004
Number of extensions: 73674
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)