Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0528.Seq
(964 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 32 0.59
07_03_0091 + 13312904-13313647 31 1.8
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 29 4.2
07_03_0089 - 13300902-13301645 29 4.2
04_04_1022 + 30195703-30195753,30195925-30195987,30197535-301978... 29 4.2
02_02_0559 - 11483798-11483988,11484076-11484163,11484288-114844... 29 4.2
02_01_0404 - 2945611-2948802 29 4.2
04_04_1021 + 30190403-30190450,30191245-30192924 29 5.5
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 29 5.5
05_03_0039 - 7621613-7622695 29 7.3
04_04_0440 - 25219961-25221529 28 9.6
02_05_0750 - 31479876-31480985 28 9.6
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 32.3 bits (70), Expect = 0.59
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 297 TGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDND 422
TGRS G F E+Y +L IA+ ++ + P N+DND
Sbjct: 2349 TGRSLGIFKPSQEDYTVDICTVLQLLIANKRLVLCPSNVDND 2390
>07_03_0091 + 13312904-13313647
Length = 247
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 724 NPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSIFPXRKPSANER 858
NP +L+PK+ P+ Q P K PKP P +PS N +
Sbjct: 147 NPKPTPQLDPKQDPQPNPQPSPKADPKPNPKPK--PQPEPSPNPK 189
>07_03_1562 -
27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 29.5 bits (63), Expect = 4.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -1
Query: 499 FLSLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI*VSAIGSLKVTSWD 347
F+++ + SPTE A SLLNLT + S+ L S + SL WD
Sbjct: 608 FITIYTKKSPTETAKSLLNLT--IECSIGDLAALE----SLVSSLITALWD 652
>07_03_0089 - 13300902-13301645
Length = 247
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 724 NPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSIFPXRKPS 846
NP + +PK SP+ + P K PKP+ P KPS
Sbjct: 63 NPQPNPQPDPKPSPQPDPKPTPQPEPKQDPKPNPQPDPKPS 103
>04_04_1022 +
30195703-30195753,30195925-30195987,30197535-30197843,
30197934-30199292
Length = 593
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 62 VALALFGSVAAQPA-KDAFWKGTPMDSMVEEMRSGCAKDPTQLPASNT 202
+ALA G V A P K GTP+ S+ + + + C K ++PA T
Sbjct: 255 IALAFGGFVLATPMYKRRMPTGTPIKSLAQVVVAACRKARLRVPADTT 302
>02_02_0559 -
11483798-11483988,11484076-11484163,11484288-11484405,
11484489-11484637,11484921-11484974,11485065-11485160,
11486092-11486242,11486300-11486382,11486577-11486695,
11487111-11487237
Length = 391
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 28 EKNGVQ*SGVFGRPRPLRERGSATSQGCLLEGNPYGQHGRG 150
E G Q G+ G P+ E A G EG +G HG G
Sbjct: 49 ESWGPQVKGLTGAVEPVDEESPAGDDGAAGEGAEHGDHGEG 89
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 29.5 bits (63), Expect = 4.2
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = -1
Query: 514 DGTMIFLSLALRASPTERAPSLLNLT--LRVNSSLSRFLGLTVI*VSAIGSLKVTSWD*M 341
DGT+ +SLA + +PSL NLT LR+N S + G + + A S+ V
Sbjct: 86 DGTVTDVSLASKGLEGRISPSLGNLTGLLRLNLSHNSLSGGLPLELMASSSITVLDISFN 145
Query: 340 *FSTPSKKSPVDRPVTSLPAPFFVTSTTSRSGKCPS*KW 224
+ P PV P S+ S +G+ PS W
Sbjct: 146 HLKGEIHELPSSTPVR--PLQVLNISSNSFTGQFPSATW 182
>04_04_1021 + 30190403-30190450,30191245-30192924
Length = 575
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 53 VCLVALALFGSVAAQPA-KDAFWKGTPMDSMVEEMRSGCAKDPTQLPA 193
VC VA+A G V A P K + GTP+ S+ + + + C K ++PA
Sbjct: 233 VC-VAIAFGGFVLATPMYKRSMPTGTPLKSLAQVVVAACRKVSLRVPA 279
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 2 RSINTSRNQKKMVSSKVVCLVALALFGSVAAQPAKDAFWKGTPMDSMVEE 151
+ ++T+ K VSS VCL + L G+ + AKD G P S VE+
Sbjct: 336 QQVDTNGGMDKPVSSSAVCLPSQGLSGNDQSLSAKD---DGAPRRSKVEK 382
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.7 bits (61), Expect = 7.3
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Frame = +1
Query: 595 SAVFLLLRCLRGSGYLPALQEDRGRQLAPSNRCPRSLGRRLRSNPPTXX-RLNPKESPRN 771
+A LLL L + L G+ L R GR + PP + PK P
Sbjct: 9 TAAVLLLGALAVASALVDEAAAAGQGLGHGARFMSKQGRAMYEKPPELEPKPKPKPKPHP 68
Query: 772 GLQRLPXRXXKHXPKPSIFPXRKPSANERCK 864
+ P + P+P +P KP K
Sbjct: 69 KHESKPEPKPEPKPEPKPYPEPKPETKPELK 99
>04_04_0440 - 25219961-25221529
Length = 522
Score = 28.3 bits (60), Expect = 9.6
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 607 LLLRCLRGSGYLPALQEDRGRQLA---PSNRCPRSLGRRLR 720
L LRC RGSG +L +D RQ+A PS R R R LR
Sbjct: 103 LALRCARGSG-TDSLSDDGARQVAAALPSARLARLKLRGLR 142
>02_05_0750 - 31479876-31480985
Length = 369
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 661 DLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTD 560
+L+ L+D GD GEER+ +S P D D
Sbjct: 103 ELMEGLDDKDEEGDVRGEERRGQSTPGSPEFDPD 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,724,894
Number of Sequences: 37544
Number of extensions: 558257
Number of successful extensions: 2065
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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