Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0528.Seq
(964 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 33 0.35
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 31 1.4
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 31 1.8
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 30 2.4
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 29 4.2
SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 29 5.6
SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16) 29 7.4
SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_12990| Best HMM Match : PSI (HMM E-Value=6) 29 7.4
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02) 28 9.8
SB_11873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15) 28 9.8
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 33.1 bits (72), Expect = 0.35
Identities = 26/94 (27%), Positives = 44/94 (46%)
Frame = -1
Query: 529 QNEHQDGTMIFLSLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI*VSAIGSLKVTSW 350
QN+ D +++ + P+ + S L+ +V SSLS +G T+ S + + SW
Sbjct: 807 QNDEPDNDSALQAMSSPSPPSSISLSSLHPIQKV-SSLSSSIGSTLASQSTASASHIPSW 865
Query: 349 D*M*FSTPSKKSPVDRPVTSLPAPFFVTSTTSRS 248
+ S PS S + +S P TS++S S
Sbjct: 866 SSLSSSFPSLSSRLSSASSSASPPGTTTSSSSSS 899
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 31.1 bits (67), Expect = 1.4
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Frame = +1
Query: 661 RGRQLAPSNRCPRSLGRRLRSNPPTXXRLNPKESPRNGLQRLPXRXXKHXPK--PSIFPX 834
RGR P R R ++ P T + PK P+ + P K PK P P
Sbjct: 236 RGRVTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPK 295
Query: 835 RKPSANERCKKIRLXXXTVQNQPKKVSIXAVTV 933
K + + K ++ PK S ++ V
Sbjct: 296 TKSKSKSKTKTATPGKTKSKSTPKPASKPSLKV 328
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 369 LPIADTQITVSPRNLDNDELTLNVKFN 449
LP A Q T SPRNL+N L + FN
Sbjct: 1615 LPDASNQTTKSPRNLENPWFVLEIVFN 1641
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 661 DLLAKLEDSQSHGDNEGEERQLKSVP-SLQTEDTDSQWDEGHGLEQNEHQDG 509
DLLA+ DS S N GE + VP SL D+ SQ D G + E G
Sbjct: 956 DLLAE-SDSDSDDSNVGETERRSRVPGSLIGSDSASQGDHGDFYSEEESSTG 1006
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 396 VSPRNLDNDELTLNVKFNKEGARSVGEARKAKLKKIIVPSWCSFC 530
V+P++ DE+T +V + G A KA K++ P W S C
Sbjct: 1520 VTPKDGRKDEVTTHVVAARLGTEKAYRALKAPGIKLVNPMWLSCC 1564
>SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 130 YGQHGRGDEVRLREGSDPTACIKYK 204
Y QHGRGD V ++E +PT+ +KYK
Sbjct: 427 YAQHGRGDRVSVQE-VEPTS-LKYK 449
>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 685 LRVRVVGRDLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHG 536
+R+R DL +L D+QS + + E +VPS++ E+ D+ W + G
Sbjct: 182 VRLRSKVMDLENRLVDAQSQLNKQSGETSAPNVPSIKVEEGDA-WKQKTG 230
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 646 ALQEDRGRQLAPSNRCPR--SLGRRLRSNPPTXXRLNPKESPRNGLQRLP 789
+L+ R L S + R SL R L++NP T + +PK S + L++ P
Sbjct: 52 SLKTSRKTSLNASRKTSRKTSLKRSLKTNPKTSPKTSPKISLKTSLKKSP 101
>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
Length = 535
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 85 RGSATSQGCLLEGNPYGQHGRGDEVRL-REG 174
RG+AT QGC+ EG + GD L REG
Sbjct: 391 RGAATMQGCMREGEQDVEKDSGDHHHLDREG 421
>SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 827
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 625 RGSGYLPA-LQEDRGRQLAPSNRCPRSLGRRLRSNPPTXXR 744
+GS + A LQE G+ P +LG+R RS PT R
Sbjct: 17 KGSATMDATLQEKEGQGQGQRQEAPYNLGKRERSRSPTQRR 57
>SB_12990| Best HMM Match : PSI (HMM E-Value=6)
Length = 270
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 85 RGSATSQGCLLEGNPYGQHGRGDEVRL-REG 174
RG+AT QGC+ EG + GD L REG
Sbjct: 126 RGAATMQGCMREGEQDVEKDSGDHHHLDREG 156
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 28.7 bits (61), Expect = 7.4
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 6/142 (4%)
Frame = +1
Query: 460 LVQLEKHAKLSSRRSSSHPGVRSAQGHDPHPIGYRCPRSEGLERSSAVFLLLRCLRGSGY 639
L Q +K S RS+S RS P P+S S + + L+
Sbjct: 245 LNQKRSRSKHSRSRSNSRDQKRSRSRRSHTPPSEERPKSRLYRHSRSKSKERKTLKSPIR 304
Query: 640 LPALQEDRGRQLAPSNRCP-----RSLGRRLRSNPPTXXRLNPKESPRNGLQRLPXRXXK 804
P Q R R ++ P RS RR RS R + SPR+ L R R
Sbjct: 305 SPRGQSSRERNTKRKSKSPSLERRRSRARRSRSIERRDRRRSRSRSPRSSLGRSRRRSSS 364
Query: 805 HXPKPSIFPXRKP-SANERCKK 867
+ + P + +C+K
Sbjct: 365 RNRRRRRSRSKSPLNTKSQCEK 386
>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
Length = 817
Score = 28.3 bits (60), Expect = 9.8
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -1
Query: 715 SGVPRTVGSDLRVRVVGRDLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHG 536
S V V SD + + ++ + +DS S GD E + Q + PS+ DT+ + G+
Sbjct: 528 SEVEAKVDSDDNLGTIQKEAITDNDDSMSTGDKERLKLQ-STAPSISNHDTERK-SSGNE 585
Query: 535 LE 530
+E
Sbjct: 586 IE 587
>SB_11873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 9.8
Identities = 21/100 (21%), Positives = 46/100 (46%)
Frame = -1
Query: 673 VVGRDLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHGLEQNEHQDGTMIFL 494
V+ R + L S +H E +++S SLQT+++ + + G + + T++FL
Sbjct: 12 VLERSPHSMLVGSGAHTFAEQNGVKIESEESLQTQESKDAYKKHQGQKLAKEGHDTLVFL 71
Query: 493 SLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI*VSAI 374
A +P E ++ ++ +LS + V+ + +
Sbjct: 72 VDAQGYTPQEACEQVVRVSQTKAGTLSEPFEMAVLAIDKV 111
>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
Length = 512
Score = 28.3 bits (60), Expect = 9.8
Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Frame = +2
Query: 38 VSSKVVCLVALALFG-SVAAQPA 103
++++ VCLV LALFG S+AA+PA
Sbjct: 1 MAARGVCLVLLALFGCSLAAKPA 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,643,340
Number of Sequences: 59808
Number of extensions: 594200
Number of successful extensions: 1757
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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