Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0528.Seq
         (964 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB018347-1|BAA34524.1| 1211|Homo sapiens KIAA0804 protein protein.     33   2.1  
AK093146-1|BAC04073.1|  889|Homo sapiens protein ( Homo sapiens ...    32   2.7  
AK022945-1|BAB14322.1|  793|Homo sapiens protein ( Homo sapiens ...    32   2.7  
AY451390-1|AAS15572.1|  508|Homo sapiens estrogen receptor-relat...    27   8.0  

>AB018347-1|BAA34524.1| 1211|Homo sapiens KIAA0804 protein protein.
          Length = 1211

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = -1

Query: 658  LLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHGLEQNEHQ-------DGTMI 500
            L +KL++    G+N  E+  LK V     E         H L Q + +       +  M 
Sbjct: 876  LQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQREALWFPLLEAMMA 935

Query: 499  FLSLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI 389
               L+  A P   + +L +LT++V +S++ F+ L  I
Sbjct: 936  PQKLSSSAIPHLHSEALKSLTMQVLNSMAAFIALPSI 972


>AK093146-1|BAC04073.1|  889|Homo sapiens protein ( Homo sapiens cDNA
            FLJ35827 fis, clone TESTI2006453, weakly similar to
            Microtubule-associated protein like echinoderm EMAP. ).
          Length = 889

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
 Frame = +1

Query: 520  VRSAQGHDPHPIGYRCPRSEGLERSSAVFLLLRCLRGSGYLPALQEDRGRQLAPSNRCPR 699
            VRS QG +PH  G R PR +    +  +   L   +G  +LP         +A + R  R
Sbjct: 760  VRSCQGAEPHVRGPRQPRDQRPIHARRLAPRLAGRQGRQHLP---------VASAGRWGR 810

Query: 700  SLG-RRLRSNPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSI 825
              G R   SNP    RL P+        RL  R     P PS+
Sbjct: 811  GAGARHALSNPLPVPRLLPRRLIAAWRDRLARRRGPAPPCPSL 853


>AK022945-1|BAB14322.1|  793|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12883 fis, clone NT2RP2003981, weakly similar to
           VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS8. ).
          Length = 793

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = -1

Query: 658 LLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQWDEGHGLEQNEHQ-------DGTMI 500
           L +KL++    G+N  E+  LK V     E         H L Q + +       +  M 
Sbjct: 458 LQSKLQEVTHQGENTKEDPSLKDVEDTMVETIALCQRNSHNLNQQQREALWFPLLEAMMA 517

Query: 499 FLSLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI 389
              L+  A P   + +L +LT++V +S++ F+ L  I
Sbjct: 518 PQKLSSSAIPHLHSGALKSLTMQVLNSMAAFIALPSI 554


>AY451390-1|AAS15572.1|  508|Homo sapiens estrogen receptor-related
           receptor beta2-delta-10 protein.
          Length = 508

 Score = 27.5 bits (58), Expect(2) = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 643 PALQEDRGRQLAPSNRCPRSLGRRL 717
           P    +RGRQ++PS R P   G+ L
Sbjct: 480 PTPLNERGRQISPSTRTPGGQGKHL 504



 Score = 21.8 bits (44), Expect(2) = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 481 AKLSSRRSSSHPGVRSAQGHDPHPIGYR 564
           A  +SR  S+ PG+ + +   P P+  R
Sbjct: 459 AAFTSRDQSNSPGIPNPRPSSPTPLNER 486


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,073,533
Number of Sequences: 237096
Number of extensions: 2904313
Number of successful extensions: 8551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8549
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12769697060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)