Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0528.Seq
         (964 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40798-2|AAQ01525.2|  389|Caenorhabditis elegans Hypothetical pr...    30   2.8  
AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    29   6.5  

>U40798-2|AAQ01525.2|  389|Caenorhabditis elegans Hypothetical
           protein R13A1.9 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 3   VQSTPVGIRKKWCPVKWCVWSPSPSSGAWQRNQPRMPSGREPLWTAW 143
           ++ T  G  K W P+ WC      +S  W+ + P +P+    L+  W
Sbjct: 171 LEQTETGYNKYWVPINWC------NSIVWRMHIPLIPATSFFLYLGW 211


>AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 276 NGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDELTLNVKFNKE 455
           +G  + V G S    F+G E YI   +   +  +   ++T  P +  N E + +VK+N+ 
Sbjct: 523 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 581

Query: 456 GARS 467
           GA++
Sbjct: 582 GAQA 585


>AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7b protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 276 NGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDELTLNVKFNKE 455
           +G  + V G S    F+G E YI   +   +  +   ++T  P +  N E + +VK+N+ 
Sbjct: 521 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 579

Query: 456 GARS 467
           GA++
Sbjct: 580 GAQA 583


>AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7c protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 276 NGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDELTLNVKFNKE 455
           +G  + V G S    F+G E YI   +   +  +   ++T  P +  N E + +VK+N+ 
Sbjct: 495 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 553

Query: 456 GARS 467
           GA++
Sbjct: 554 GAQA 557


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 712 RLRSNPPTXXRLNPKESPRNGLQRLPXRXXKHXPKPSIFPXRKPSANERCK 864
           +L+S P    +L PK  P    +  P    K  PKP   P  +P  N R K
Sbjct: 258 KLKSEPKPKPKLKPKPKPNPKPEPNPMPELK--PKPKHKPNSRPKPNPRPK 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,781,698
Number of Sequences: 27780
Number of extensions: 424505
Number of successful extensions: 1448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)