Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0528.Seq
         (964 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 500 LLELSFACFSN*TSAFLVELD 438
           LLE +F C  N  +AFL  LD
Sbjct: 155 LLERAFRCLGNNLTAFLTTLD 175


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 515 LVFVLLKAMTLIPLAIGVLGLKAWNALQLSFFSFVVSVALA 637
           L+ V++  +TL    + +L +    ALQ     F+VS+A+A
Sbjct: 191 LILVIVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVA 231


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 566 VLGLKAWNALQLSFFSFVVSVALAIF 643
           +LG++    + L+F+SF+VS  L  F
Sbjct: 382 LLGIQCLTVVCLAFWSFIVSTILLWF 407


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 112 GILGWLRCHAPEEGEGDQTHHFTGHHFFLIPTGV 11
           G  G LRC A   GE   T       FF +P GV
Sbjct: 236 GYEGALRCLAHNGGEIAWTKVIYVKRFFGLPVGV 269


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 112 GILGWLRCHAPEEGEGDQTHHFTGHHFFLIPTGV 11
           G  G LRC A   GE   T       FF +P GV
Sbjct: 236 GYEGALRCLAHNGGEIAWTKVIYVKRFFGLPVGV 269


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 112 GILGWLRCHAPEEGEGDQTHHFTGHHFFLIPTGV 11
           G  G LRC A   GE   T       FF +P GV
Sbjct: 236 GYEGALRCLAHNGGEIAWTKVIYVKRFFGLPVGV 269


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 50  VVCLVALALFGSVAAQPAKDAFWKGTPMDSMVEEMRSGCAKDPTQLPA 193
           VV LV + +   +  + A D   K  P D    E R+G    P   PA
Sbjct: 542 VVLLVIIIIMTVLILRRASDECNKKQPSDCDTLEYRNGEVTTPLFTPA 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,937
Number of Sequences: 438
Number of extensions: 4688
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)