Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0526.Seq
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 60 4e-10
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 33 0.037
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.61
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 28 1.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 26 5.6
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 9.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.9
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 25 9.9
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 60.1 bits (139), Expect = 4e-10
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Frame = +3
Query: 261 ISVLEVLAA-NGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHN---PPE 428
I V+ +AA NGV+ I+ NG+ TPA S+ I + GG I++T SHN P
Sbjct: 67 IQVIAAIAAGNGVEKIIVGTNGYLSTPAASHIIRKYKLTGG-----IILTASHNAGGPKN 121
Query: 429 DGGIKYNPPNGGPADTNVTKVV 494
D GIKYN NGGPA +VT+ +
Sbjct: 122 DFGIKYNLGNGGPAPESVTEKI 143
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 33.5 bits (73), Expect = 0.037
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 393 GIVITPSHNPPEDGGIKYNPPNGG 464
G++IT SHNP ED G+K +GG
Sbjct: 45 GVMITASHNPVEDNGVKIIDADGG 68
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 70 RSRECGDAVKFGTSGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGK 231
R+R C VK +S + + R+ NEP AI A+ + I GP GK
Sbjct: 1106 RARPCSQPVKHSSSEIKAAMKRYQVNEPQAKAIMCAL-DNNGFTLIQGPPGTGK 1158
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 28.3 bits (60), Expect = 1.4
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +1
Query: 364 TIKKVARWQTVS*LHRPITRRKMVESNTIRQMVARLIPTSLKWWKTGPSTAG-----RWP 528
T +++ +S H + R +VE + + ARLI T++K + T P+T +
Sbjct: 771 TTRQLESMIRLSEAHAKMHLRNVVEVGDVLE-AARLIKTAIKDYATDPATGKISLDLIYV 829
Query: 529 EXREAYLPRRSDGIRSCERAGSGAAVSWKVWPISLIWPRFRKRA 660
RE +P D ++ S V K +S + RFR+++
Sbjct: 830 NERETLVP--EDMVKELANLISNLTVGGKTMLVSQLLTRFREQS 871
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 720 PNTLPVXDTGNAQRINAPASGPLSESRPYQRY 625
P+TLP + N ++++ S PLS+ RP+ +
Sbjct: 70 PDTLPTSLSINPKKLSLSFSFPLSQKRPFPNF 101
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 285 ANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITP 410
++G V E N F PTP S+ + N P +D ++TP
Sbjct: 201 SHGNSVEADEINSFNPTPFSSSPLHFTNSSPNPNSD--IVTP 240
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 9.9
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 1/154 (0%)
Frame = -3
Query: 686 PSGSTPQRQARFL-NRGHINDIGQTFHETAAPDPALSHDRMPSLRRGRYASRXSGHRPAV 510
PS S ++ A FL ++G I+ ++ A H + S+ R R + H P V
Sbjct: 91 PSLSVAKQSAAFLESKGPIDSAEVIIYD--ATKGLRKH--LDSIDRNRKYTEEI-HIPQV 145
Query: 509 LGPVFHHFSDVGISRATIWRIVFDSTIFRRVMGRCNHDTVCQRATFFIVNQDGIGNGRRR 330
+F GI++ W+ D RR + Q + F+V Q I + + +
Sbjct: 146 YSVLFPS-KYFGIAKQ-FWQHTGDGISSRRAAAFLHSYKKIQSISEFLVAQRSISHLKSK 203
Query: 329 GEAIVFLHNDINAVRCQHFQNGNECGSDRA*VSL 228
+ H D+ A+ GN+ + VSL
Sbjct: 204 SRSRYASHPDLQALNTWMTNEGNQANDEMEDVSL 237
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 310 RKTMASPRRLPFPMPSWFTIKKV 378
+KT++ R + MP WF +K V
Sbjct: 1184 KKTLSKEDRSTYAMPLWFQVKMV 1206
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = +3
Query: 411 SHNPPEDGGIK---YNPPNGGPAD 473
S P +G I+ + PPNGGP D
Sbjct: 245 SSRPDPNGSIRSCHFTPPNGGPLD 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,752,031
Number of Sequences: 5004
Number of extensions: 83628
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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