Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0526.Seq
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 55 8e-08
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 47 2e-05
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521... 36 0.030
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 35 0.068
07_03_0216 + 15286968-15286970,15287068-15287213,15288333-152883... 33 0.28
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 32 0.64
12_01_0827 - 7662180-7662192,7662451-7662764 31 1.1
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 30 1.9
12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763... 29 3.4
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 29 3.4
02_05_0375 + 28387091-28387597 29 3.4
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 29 3.4
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 5.9
05_02_0122 - 6840840-6841307 29 5.9
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 54.8 bits (126), Expect = 8e-08
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADG-IVITPSHNP---PEDG 434
+ ++ AANGV + N TPAVS I G A G ++T SHNP ED
Sbjct: 75 ITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGPTEDF 134
Query: 435 GIKYNPPNGGPADTNVT 485
GIKYN NGGPA +VT
Sbjct: 135 GIKYNMENGGPAPESVT 151
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 47.2 bits (107), Expect = 2e-05
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP--PE-DGG 437
+ ++ A NGV I+ NG TPAVS I G G +++ SHNP P+ D G
Sbjct: 102 ITKIAAGNGVGKILVGRNGLLSTPAVSAVIRKRQANG-----GFIMSASHNPGGPDNDWG 156
Query: 438 IKYNPPNGGPADTNVT 485
IK+N +G PA +T
Sbjct: 157 IKFNYSSGQPAPETIT 172
>07_01_0688 -
5211484-5211626,5211730-5211826,5211930-5212105,
5212240-5212631,5212712-5212960,5213046-5213188,
5213283-5213402,5214491-5214835
Length = 554
Score = 36.3 bits (80), Expect = 0.030
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 336 PAVSNAILV---HNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGG 464
PAV A +V + K G A G+VIT SHNP D G+K +GG
Sbjct: 46 PAVCRAGVVAALRSAKLGGAAVGVVITASHNPVRDNGVKIVDADGG 91
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 330 PTPAVSNAILVHNKKGGPL--ADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVV 494
P PA+SN L N P+ A + + PS +PPE G P+ N VV
Sbjct: 1866 PGPALSNPALAANSSSNPVLSAGTVALPPSPHPPESIAAPRGQQKGAPSGLNTVPVV 1922
>07_03_0216 +
15286968-15286970,15287068-15287213,15288333-15288335,
15288514-15288697,15289772-15289824,15290118-15290206,
15291270-15291506,15293494-15293687,15293774-15293834,
15293905-15294022,15294093-15294174,15295212-15295337,
15295435-15295530,15295945-15296099,15296706-15296802,
15296926-15297003,15297085-15297192
Length = 609
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 321 GFTPTPAVSNAILVHNKKGGPLADG-IVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVE 497
G TPA+ N+ L ++ DG I+IT SH P G+K+ GG ++ ++E
Sbjct: 130 GLASTPAMFNSTLTEDEINHCPVDGAIMITASHLPYNRNGLKFFTSAGGLNKADIKDILE 189
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 381 PLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVE--DRAKHCWPMA 527
P+ DG + S P + G Y+PP+ PA TN++K E ++ K C P A
Sbjct: 1140 PIRDGDSSSASRVPNQSGAHVYSPPH--PATTNLSKSEETMNQCKSCEPEA 1188
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +1
Query: 451 RQMVARLIPTSLKWWKTGPST------AGRWPEXREAYLPRRSDGIRSCERAGSGAA 603
RQ R +P + KWW P T + R P + LPR+ +C R +G +
Sbjct: 7 RQCSDRCVPEAQKWWICTPKTQQTVVPSARGPTATDQVLPRQRSDRSACPRPKNGGS 63
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 303 IVQENNGFTPT-PAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYN 449
I++ F+P+ P + + K GPL++G + S NP E +++N
Sbjct: 392 ILRRGGPFSPSSPLYVTVVTIMEKVPGPLSEGSLWLTSSNPLESPSVRFN 441
>12_01_1063 +
10974522-10974776,10975094-10975599,10976243-10976321,
10976337-10976633,10976712-10976976,10977055-10977425
Length = 590
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 273 EVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLAD 392
EV++ DV+VQ N+ TP+P+ + H ++G L +
Sbjct: 176 EVVSVVFDDVVVQHNHPLTPSPSAVKHMRSHKQRGDTLIE 215
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 353 HPGSQ*KRWPAGRRYRDYTVP*PAGRWWNQIQSAKWWPG 469
HPG WP G R+ D W +++S WWPG
Sbjct: 33 HPGGG-GAWPRGVRFGDMV--------WGKVKSHPWWPG 62
>02_05_0375 + 28387091-28387597
Length = 168
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/53 (45%), Positives = 27/53 (50%)
Frame = +1
Query: 31 RRPTDGAILCTETRSRECGDAVKFGTSGHRGSAARHSFNEPHILAIAQAIAEE 189
RRP DG L TRSR GD T G R AARHS + L + A+ EE
Sbjct: 6 RRPHDGDGL---TRSR-AGDDPAMPTGGGRAVAARHSRSN---LRVPLAVVEE 51
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 76 RECGDAVKFGTSGHRGSAARHSFNE 150
R+C D+ +FG SG RG SFN+
Sbjct: 171 RDCRDSRQFGPSGGRGRGRGRSFNQ 195
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 372 KGGPLADGI-VITPSHNPPEDGGIKYNPPNGGPA 470
KGGP G +TPS P + NPPN P+
Sbjct: 431 KGGPNPSGTPAVTPSFPSPVNNQFSPNPPNAFPS 464
>05_02_0122 - 6840840-6841307
Length = 155
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 358 WFTIKKVARWQTVS*LHRPITRRKMVESNTIRQMVAR-LIPTSLKWWKTGPSTAGRW 525
W T RW+TVS R T +S T AR + W+T +TA RW
Sbjct: 16 WRTAPAAVRWRTVSAAARWRTAAAAAQSRTAASAAARWRTAAPVVRWRTAAATA-RW 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,833,069
Number of Sequences: 37544
Number of extensions: 684223
Number of successful extensions: 1834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1831
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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