Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0526.Seq
         (826 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)                  32   0.65 
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              32   0.65 
SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_9891| Best HMM Match : KE2 (HMM E-Value=1)                          30   2.0  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 29   3.5  
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             29   4.6  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                29   6.1  
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   29   6.1  
SB_52772| Best HMM Match : rve (HMM E-Value=0.001)                     28   8.0  
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)          28   8.0  
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)          28   8.0  

>SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)
          Length = 1444

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 436 PPSSGG-LWDGVITIPSASGPPFLL*TRMALETAGV-GVKPLFSCTMTSTPFAASTS 272
           PPS+   L+ G+ TIP  S     L TRMAL    + G++P  S T T    A  TS
Sbjct: 361 PPSTRNILFQGIETIPLYSQSSSALQTRMALMLESIKGLRPASSITPTFEHMAVDTS 417


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 327 TPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADT 476
           TP+P +   ++ +N    P     V TPSH PP      + PP   P+ T
Sbjct: 360 TPSPTMGKTLIQYNPVSTPSNTPPVSTPSHTPPVSTP-SHTPPVSTPSHT 408


>SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 351 AILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNG 461
           A++    K G  A G+VIT SHNP  D G+K   P G
Sbjct: 47  AVIRSRAKEGQ-AIGVVITASHNPIYDNGVKLVDPLG 82


>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
          Length = 572

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 315 NNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKY 446
           NN  T TPAV +  ++    GG LA    I P  +    GG+ Y
Sbjct: 326 NNIMTSTPAVGSIGIIPGHPGGDLAAPTPILPPQSVHNTGGLGY 369


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 695 PETPSGSTPQRQARFLNRGHINDIGQTFHETA 600
           P +P GSTP R+ RF +  H+ +   + + +A
Sbjct: 546 PSSPQGSTPGRRQRFFDMDHLRESTFSLYSSA 577


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 166 IAQAIAEERAKNGITGPCYVGKDTHALSEPHSFPFW 273
           + + + E+ A NG    CYV  D    + PH +  W
Sbjct: 191 MVEILKEKAAANGYVPDCYVAADEVPEARPHPYMVW 226


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 276  VLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIV-ITPSHNPP-EDGGIKYN 449
            ++A + VDVIVQ  N +TP+ + S    V   +  P+   ++ I  S N     G + Y+
Sbjct: 3420 LMAVSHVDVIVQALNEYTPSFSQSE-YNVTISEATPIGTTVIDIDASDNDSGPQGELTYS 3478

Query: 450  PPNGGP 467
             P+G P
Sbjct: 3479 MPSGSP 3484


>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 221

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 384 LADGIVITPSHNPPEDGGIKYNPPNGGPADTNVT 485
           + +G+   P H+ P DG     P    PAD+N T
Sbjct: 141 VCNGVEAKPKHDSPMDGNPSPLPQGAHPADSNST 174


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 436 PPSSGGLWDGVITIPSASGPPFLL*TRMALETAGVGVKPLFSCTMTSTPFAASTSRTE 263
           PP+ GGL+ G    P AS PP    + M   + G+      + + TS PFA+S   T+
Sbjct: 474 PPAGGGLFSGSSFGP-ASQPP-STGSVMFSSSGGMSGSGTSTTSTTSVPFASSVPSTD 529


>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 646

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 321 GFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVED 500
           G T TP   + ++      G  +  +++ P H   +   I +N    GP     T++V D
Sbjct: 146 GITNTPVPESKLVGQLGYRGRWSSSVILRPLHTGMDPKNIPFNALIVGPTSCGKTQLVVD 205

Query: 501 R 503
           R
Sbjct: 206 R 206


>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
          Length = 658

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 345 SNAILVHNKKGGPL-ADGIVITPSHNPPEDGGIKYNPP 455
           S+++++ N+ G P+  D ++IT   +  +DG I+++PP
Sbjct: 220 SSSVILINQDGEPIHVDYVIITVPLSILKDGDIRFSPP 257


>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1108

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = -3

Query: 557 RRGRYASRXSGHRPAVLGPVFHHFSDVGISRATIW---RIVFDSTIFRRVMGRCNHDTVC 387
           RR    S   GH  A   P   H S  G ++  +W   R   DS I     G+C++ TV 
Sbjct: 387 RRFVRPSPEGGHSGAPAAPAIGHESFYGDNKFALWIDLRTTDDSAIHG---GKCDY-TVL 442

Query: 386 QRATF-FIVNQDGIGNGRRR 330
              TF +    DG G G  R
Sbjct: 443 MCPTFVYNKTYDGFGGGDNR 462


>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
          Length = 466

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  CGDAVKFGTSGHRGSAARHSFNEPHI 159
           CG +V +GT   + S  RH  N+ HI
Sbjct: 397 CGTSVTYGTYAEQASRTRHMRNKRHI 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,495,277
Number of Sequences: 59808
Number of extensions: 694430
Number of successful extensions: 1729
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)