Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0526.Seq
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41533-2|AAA83163.1| 568|Caenorhabditis elegans Hypothetical pr... 64 2e-10
AL021481-3|CAD90182.1| 459|Caenorhabditis elegans Hypothetical ... 40 0.003
AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical ... 40 0.003
Z54271-1|CAA91032.1| 550|Caenorhabditis elegans Hypothetical pr... 31 0.76
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 29 4.0
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 29 5.3
AL021483-6|CAJ76968.1| 87|Caenorhabditis elegans Hypothetical ... 29 5.3
AL021483-5|CAA16346.1| 255|Caenorhabditis elegans Hypothetical ... 29 5.3
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 28 9.3
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p... 28 9.3
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 28 9.3
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 28 9.3
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 28 9.3
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 9.3
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 28 9.3
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 28 9.3
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 9.3
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 28 9.3
>U41533-2|AAA83163.1| 568|Caenorhabditis elegans Hypothetical
protein R05F9.6 protein.
Length = 568
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNP--PE-DGG 437
++++ AANG+ ++ NGF TPA+SN ++ +G + GI++T SHNP P+ D G
Sbjct: 74 IIKIAAANGLSRLIVGQNGFLSTPALSN-LIRKGHEGRVVDGGIILTASHNPGGPKGDFG 132
Query: 438 IKYNPPNGGPADTNVTKVV 494
IK+N NGGPA VT +
Sbjct: 133 IKFNCENGGPAPDQVTDAI 151
>AL021481-3|CAD90182.1| 459|Caenorhabditis elegans Hypothetical
protein Y43F4B.5b protein.
Length = 459
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 327 TPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNG----GPADTNVTKVV 494
+PTP VS A + K G A G++IT SHNP ED G K NG GP DT + ++
Sbjct: 128 SPTPVVSWATI----KLGCDA-GLIITASHNPKEDNGYKAYWSNGAQIIGPHDTEIVRIK 182
Query: 495 E 497
E
Sbjct: 183 E 183
>AL021481-2|CAA16334.1| 595|Caenorhabditis elegans Hypothetical
protein Y43F4B.5a protein.
Length = 595
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 327 TPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNG----GPADTNVTKVV 494
+PTP VS A + K G A G++IT SHNP ED G K NG GP DT + ++
Sbjct: 128 SPTPVVSWATI----KLGCDA-GLIITASHNPKEDNGYKAYWSNGAQIIGPHDTEIVRIK 182
Query: 495 E 497
E
Sbjct: 183 E 183
>Z54271-1|CAA91032.1| 550|Caenorhabditis elegans Hypothetical
protein F21D5.1 protein.
Length = 550
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 387 ADGIVITPSHNPPEDGGIKYNPPNG 461
A G++IT SHNP D G+K P+G
Sbjct: 65 AIGVMITASHNPSCDNGVKLVDPSG 89
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1
Query: 430 SSGGLWDGVITIPSASGPPFLL*TRMALETAGVGVKPLFSCTMTSTPFAASTSRTEMNAV 251
SSGGL V + +ASG + + + +AG G KPL T +A +R AV
Sbjct: 1269 SSGGLAGAVASAAAASGGIKPVAKKSSAGSAGAGAKPLTKKTSDVGKSSAPNARKTSTAV 1328
Query: 250 R 248
+
Sbjct: 1329 K 1329
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 214 PCYVGKDTHALSEPHSFPFWKCWQRTALMSLCRKTMASPRRLPFPMPSWFTIKK 375
PC V D + + EP + + + L S+CR + S +LP P P W T K
Sbjct: 321 PCRVS-DYYPVREPCTNGSSRAVYKKVLPSICRDDLPSATKLPPPTP-WKTCPK 372
>AL021483-6|CAJ76968.1| 87|Caenorhabditis elegans Hypothetical
protein Y38H8A.2b protein.
Length = 87
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 288 NGVDV--IVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNG 461
NG DV ++ ++ T P + L H + A + +T P + K NP +
Sbjct: 21 NGADVNYFMKADDSLTNGPYEKDTKLSHLRHPKIAALSLEVTEKKTPSSETPSKENPKSP 80
Query: 462 GPADTN 479
GP D+N
Sbjct: 81 GPLDSN 86
>AL021483-5|CAA16346.1| 255|Caenorhabditis elegans Hypothetical
protein Y38H8A.2a protein.
Length = 255
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 288 NGVDV--IVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNG 461
NG DV ++ ++ T P + L H + A + +T P + K NP +
Sbjct: 189 NGADVNYFMKADDSLTNGPYEKDTKLSHLRHPKIAALSLEVTEKKTPSSETPSKENPKSP 248
Query: 462 GPADTN 479
GP D+N
Sbjct: 249 GPLDSN 254
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 330 PTPAVSNAILVHNKKGGPL-ADGIVITPSHNPPEDGGIK 443
P PA+ N I HN PL P+ PP DG IK
Sbjct: 197 PLPAIINPITQHNPVQPPLIPSSDPFGPTVVPPADGSIK 235
>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
protein 44, isoform g protein.
Length = 1004
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 VLEVLAANGVDVIVQENNGFTP 332
++ +L NG +V VQ NGFTP
Sbjct: 114 IVTILVENGANVNVQSVNGFTP 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,203,531
Number of Sequences: 27780
Number of extensions: 503585
Number of successful extensions: 1240
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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