Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0526.Seq
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.5  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   3.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   3.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   3.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.9  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = +1

Query: 166 IAQAIAEERAKNGITGPCYVGKDTHALSEPHSFPFWKCWQRTALMSLCRKTMASPRRLPF 345
           I + +A +R +N     C++  D  +   P S  F+K     A  + C+K     ++   
Sbjct: 32  IDEILANDRLRNQYYD-CFI--DAGSCLTPDSV-FFKSHITEAFQTQCKKCTEIQKQNLD 87

Query: 346 PMPSWFTIKKVARW 387
            +  WFT  +  +W
Sbjct: 88  KLAEWFTTNEPEKW 101


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = +1

Query: 166 IAQAIAEERAKNGITGPCYVGKDTHALSEPHSFPFWKCWQRTALMSLCRKTMASPRRLPF 345
           I + +A +R +N     C++  D  +   P S  F+K     A  + C+K     ++   
Sbjct: 32  IDEILANDRLRNQYYD-CFI--DAGSCLTPDSV-FFKSHITEAFQTQCKKCTEIQKQNLD 87

Query: 346 PMPSWFTIKKVARW 387
            +  WFT  +  +W
Sbjct: 88  KLAEWFTTNEPEKW 101


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 342 VSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVE 497
           + +AI  H KK      GI+       PE G + +N    G   T+ TK+++
Sbjct: 88  LQSAISAHMKKVREQMAGIL----SRIPEQGVVNWNKIPEGANTTSTTKIID 135


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 342 VSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVE 497
           + +AI  H KK      GI+       PE G + +N    G   T+ TK+++
Sbjct: 88  LQSAISAHMKKVREQMAGIL----SRIPEQGVVNWNKIPEGANTTSTTKIID 135


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 342 VSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVE 497
           + +AI  H KK      GI+       PE G + +N    G   T+ TK+++
Sbjct: 88  LQSAISAHMKKVREQMAGIL----SRIPEQGVVNWNKIPEGANTTSTTKIID 135


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 180 NCLSDRQNVRLVKAVARCTATVTGSTEFHRVSAFPASGFST*Y 52
           N L DR+N+ +V         +TG     R+S     GF   Y
Sbjct: 331 NRLLDRRNIEVVAKNKETLQAITGLKVKRRISFILVHGFPLEY 373


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 677 STPQRQARFLNRGHINDIGQTFHETAAPDP 588
           STP+    +++ G+ N+I  +F ++ +  P
Sbjct: 370 STPEYDDTYMDSGYTNEIDFSFPDSVSDYP 399


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 423 PEDGGIKYNPPNGGPADTNVTKVVE 497
           PE G + +N    G   T+ TK+++
Sbjct: 63  PEQGVVNWNKIPEGANTTSTTKIID 87


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 125 LPR*PEVPNFTASPHSLLLVSVHNIAPSVGRR 30
           L R  E PN+TA P +L      N  P  G++
Sbjct: 201 LVRARETPNYTACPPTLACPLNPNPQPLTGQQ 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,063
Number of Sequences: 438
Number of extensions: 6190
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)